Hi Bruce, I have 8 GB ram and have assigned 6GB of it to FreeSurfer. Shall I increase it to 8? Would that be enough or still too low?
Thank you, Negar
On Fri, Nov 30, 2012 at 7:31 PM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
Look like it is running out of memory. How much ram do you have on that machine? Bruce
On Nov 30, 2012, at 9:29 PM, Negar Memarian negar.memarian@utoronto.ca wrote:
Hello,
I ran recon-all -all on my subject. The process ended after several
minutes with this message at the end:
recon-all -s 350_FS exited with ERRORS at Fri Nov 30 17:57:59 PST 2012
I tried loading the pial and white surfaces for editing using this
command:
tkmedit 350_FS brainmask.mgz rh.white -aux-surface lh.white
but looks like these surfaces do not exist (since the recon-all exited
prematurely). When I check the recon-all.log file I do not see any errors except a few MCSRCH errors. So I cannot understand what exactly went wrong in the recon-all. I've attached the recon-all log file. Can someone please tell me what the problem is and how I can fix it?
Many thanks, Negar p.s. I tried on more than one subject and I still face the same issue.
Negar Memarian, MASc, PhD NSERC Postdoctoral Fellow Department of Neurology David Geffen School of Medicine at UCLA
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