16 Sep
2017
16 Sep
'17
12:50 p.m.
Is it not in $FREESURFER_HOME/bin ? What version are you using?
On 9/16/17 12:05 PM, Fereshte wrote:
Well i did ask if it was possible to obtain the volume of Pial surface and here's the response;
"sure, mris_volume will give you the interior volume of any closed surface using the divergence formula. Note that this is *not* the volume of the ribbon but rather the volume of the entire interior"
I can't see mris_volume in FreeSurfer commands.
On Sat, Sep 16, 2017 at 8:09 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu mailto:fischl@nmr.mgh.harvard.edu> wrote:
sorry, can you clarify what your question is? On Sat, 16 Sep 2017, Fereshte wrote: > Dear FreeSurfer developers > I couldn't find the mentioned mris_volume in the commands. Shall i use mri_vol2surf or something? > Looking forward to hearing from you! > On Tue, Sep 5, 2017 at 9:46 AM Fereshte <fereshte.ramezani@gmail.com <mailto:fereshte.ramezani@gmail.com>> wrote: > Hi Bruce, > Thank you for your replies. > Cheers > > On Tue, Sep 5, 2017 at 4:52 AM Bruce Fischl <fischl@nmr.mgh.harvard.edu <mailto:fischl@nmr.mgh.harvard.edu>> wrote: > Hi Fereshte > > the algorithm is documented in the recon1 1999 NeuroImage and 2000 PNAS > papers > > cheers > Bruce > On Mon, 4 Sep 2017, Fereshte wrote: > > > What's the algorithm used to expand inner cortical boundary ( to achieve the > outer cortical boundary > > in pial surface) in FreeSurfer? > > On Mon, Sep 4, 2017 at 9:58 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu <mailto:fischl@nmr.mgh.harvard.edu>> wrote: > > it will give the interior volume of whatever surface you give it as a > > command line argument. > > > > On Mon, 4 Sep 2017, Fereshte > > wrote: > > > > > Using the Pial surface; Does it mean mris_volume will give the inner > cortical boundary > > of the > > > surface and not the outer boundary? > > > Sincerely, > > > Fereshte Ramezani > > > On Mon, Sep 4, 2017 at 9:53 PM Fereshte <fereshte.ramezani@gmail.com <mailto:fereshte.ramezani@gmail.com>> > wrote: > > > > > > On Mon, Sep 4, 2017 at 6:46 PM Bruce Fischl > <fischl@nmr.mgh.harvard.edu <mailto:fischl@nmr.mgh.harvard.edu>> wrote: > > > sure, mris_volume will give you the interior volume of any closed > surface > > > using the divergence formula. Note that this is *not* the volume > of the > > > ribbon but rather the volume of the entire interior > > > > > > cheers > > > Bruce > > > > > > > > > On Mon, 4 Sep 2017, Fereshte wrote: > > > > > > > Hello FreeSurfer developersIs it possible to have the volume of > pial surface > > in > > > FreeSurfer? > > > > > > > >_______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > The information in this e-mail is intended only for the person to > whom it is > > > addressed. If you believe this e-mail was sent to you in error and > the e-mail > > > contains patient information, please contact the Partners > Compliance HelpLine at > > > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > > > but does not contain patient information, please contact the > sender and properly > > > dispose of the e-mail. > > > > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to whom it > is > > addressed. If you believe this e-mail was sent to you in error and the > e-mail > > contains patient information, please contact the Partners Compliance > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > > but does not contain patient information, please contact the sender and > properly > > dispose of the e-mail. > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and properly > dispose of the e-mail. > > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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