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Hello FreeSurfer Developers, I am attempting to produce watershed surfaces (inner_skull, outer skull, outer skin, brain). I plan to use these for EEG functional connectivity analyses. However, they turn out faulty (image attached). Any insights as to why this might be happening?
1) FreeSurfer version: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b 2) Platform: Ubuntu 22.04.3 LTS 3) recon-all.log: see attached
Thank you for your time.
Best, Diksha
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What command are you using to generate the surfaces? I don't think this is done by default in recon-all
On 9/3/2023 1:22 PM, Srishyla, Diksha wrote:
External Email - Use Caution
Hello FreeSurfer Developers, I am attempting to produce watershed surfaces (inner_skull, outer skull, outer skin, brain). I plan to use these for EEG functional connectivity analyses. However, they turn out faulty (image attached). Any insights as to why this might be happening?
- FreeSurfer version:
freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b 2) Platform: Ubuntu 22.04.3 LTS 3) recon-all.log: see attached
Thank you for your time.
Best, Diksha
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I am using this command in mne python: 'make_watershed_bem()'.
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What command are you using to generate the surfaces? I don't think this is done by default in recon-all
On 9/3/2023 1:22 PM, Srishyla, Diksha wrote:
External Email - Use Caution
Hello FreeSurfer Developers, I am attempting to produce watershed surfaces (inner_skull, outer skull, outer skin, brain). I plan to use these for EEG functional connectivity analyses. However, they turn out faulty (image attached). Any insights as to why this might be happening?
1) FreeSurfer version: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b 2) Platform: Ubuntu 22.04.3 LTS 3) recon-all.log: see attached
Thank you for your time.
Best, Diksha
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Srishyla, Diksha