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Dear FreeSurfer developers,
When running RECON-ALL -MAKE ALL after correcting a few errors from the recon-all output, it exits with an error. This occurs when the mris_label2annot command is called.
Loading /Users/mariondurteste/Documents/PhD/FreeSurfer/ReconstructedAfterQC/ToDo/ALA076_1/surf/lh.orig
1 1376057 FG1
2 16711935 FG2 ERROR: lh.FG2.mpm.vpnl.label, n=580,
vertex 119494 out of range
If we rerun the -make all command a second time it then finishes without errors. Do you know why this is ?
* FREESURFER version: freesurfer-darwin-macOS-7.1.1-20200811-8b40551 * Platform: macOS BigSur 11.2.2
Thanks for your help ! Marion D
The "-make" functionality does not work in V7. We should have disabled that flag
On 4/2/2021 3:41 AM, Marion DURTESTE wrote:
External Email - Use Caution
Dear FreeSurfer developers,
When running*recon-all -make all *after correcting a few errors from the recon-all output, it exits with an error. This occurs when the mris_label2annot command is called.
Loading /Users/mariondurteste/Documents/PhD/FreeSurfer/ReconstructedAfterQC/ToDo/ALA076_1/surf/lh.orig 1 1376057 FG1 2 16711935 FG2 ERROR: lh.FG2.mpm.vpnl.label, n=580, vertex 119494 out of range
If we rerun the -make all command a second time it then finishes without errors. Do you know why this is ?
- FREESURFER version: freesurfer-darwin-macOS-7.1.1-20200811-8b40551
- Platform: macOS BigSur 11.2.2
Thanks for your help ! Marion D
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Hi Douglas,
Thank you very much for your answer!
What would you suggest is therefore the best way to do this in V7?
Best wishes,
Marion D
Le 2021-04-06 15:18, Douglas N. Greve a écrit :
The
"-make" functionality does not work in V7. We should have disabled that flag
On 4/2/2021 3:41 AM, Marion DURTESTE wrote:
External
Email - Use Caution
Dear FreeSurfer developers,
When
running RECON-ALL -MAKE ALL after correcting a few errors from the recon-all output, it exits with an error. This occurs when the mris_label2annot command is called.
Loading
/Users/mariondurteste/Documents/PhD/FreeSurfer/ReconstructedAfterQC/ToDo/ALA076_1/surf/lh.orig
1 1376057 FG1
2 16711935 FG2 ERROR: lh.FG2.mpm.vpnl.label, n=580,
vertex 119494 out of range
If we rerun the -make all command a
second time it then finishes without errors. Do you know why this is ?
- FREESURFER version:
freesurfer-darwin-macOS-7.1.1-20200811-8b40551
- Platform: macOS
BigSur 11.2.2
Thanks for your help ! Marion D
_______________________________________________
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list
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_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1UkdgY8WI2KavkIwTtgjUBXqI6wNiOgMk6gCh3YBLdYkbnx...
Sorry, there is not a good way in v7
On 4/7/2021 2:57 AM, Marion DURTESTE wrote:
External Email - Use Caution
Hi Douglas,
Thank you very much for your answer!
What would you suggest is therefore the best way to do this in V7?
Best wishes, Marion D
Le 2021-04-06 15:18, Douglas N. Greve a écrit :
The "-make" functionality does not work in V7. We should have disabled that flag
On 4/2/2021 3:41 AM, Marion DURTESTE wrote:
External Email - Use Caution
Dear FreeSurfer developers,
When running*recon-all -make all *after correcting a few errors from the recon-all output, it exits with an error. This occurs when the mris_label2annot command is called.
Loading /Users/mariondurteste/Documents/PhD/FreeSurfer/ReconstructedAfterQC/ToDo/ALA076_1/surf/lh.orig 1 1376057 FG1 2 16711935 FG2 ERROR: lh.FG2.mpm.vpnl.label, n=580, vertex 119494 out of rangeIf we rerun the -make all command a second time it then finishes without errors. Do you know why this is ?
- FREESURFER version: freesurfer-darwin-macOS-7.1.1-20200811-8b40551
- Platform: macOS BigSur 11.2.2
Thanks for your help ! Marion D
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Douglas N. Greve -
Marion DURTESTE