External Email - Use Caution

Yes, I used the make_average_subject command. I've attached a text file below of the command line and terminal output from my attempt to average two subjects. I get the same error when I try this with the full sample.

On Tue, Mar 16, 2021 at 9:12 AM Douglas N. Greve dgreve@mgh.harvard.edu wrote:

What command are you using? make_average_subject? Send the command line and terminal output

On 3/10/2021 3:53 PM, Jordan Mullins wrote:

    External Email - Use Caution

Hello,

I am trying to create an average subject from a set of subjects, but keep getting an error that says "mghRead(mri/norm.mgz, -1): could not open file". I've read that several others have solved this issue by installing the patch available at *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* http://secure-web.cisco.com/1pGL9YbVIAdFClER63fQG-9MupKuM9T9FjR_YIeZIEoyb0d3... http://secure-web.cisco.com/1holHARxUGo27ZLvlj5vX0sbezsRgmRaNdE1T-Z728EASqGjdSamQfU6_udvX8lNDAGu6fMmZJqlcAAuJtuijJsAYfi7M55moSpWy1McHpeqmMGAqqWT-7M-IStYk9Qs2pOnTfoJznpdLsEgVASogVifdHzPfK1t3pQowp_WCXSDaaHhTDzz7qCl-DUbTHTPKKgBhR1NruBOW9_7sIsS86UbWXqE7CaL5hUOQNwrRGh4iX37y5CgC4I9HuJDYQNG_3fPAfLJmyVuWMB5QC4E_jw/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2F6.0.0-patch%2F. I did this, but continue to get the same error. I'm working with Freesurver Version 6.0.0 and MacOS Big Sur Version 11.2.3. I've attached the recon-all.log below, but please let me know if you need additional information.

Any insight on this would be appreciated! Thank you!

Jordan

-- *Jordan L. Mullins, B.A.* Doctoral Student, Department of Psychology University of California, Riverside *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* http://secure-web.cisco.com/1isz3Mv28M3mhtt4WMtIi4EdyCh_c32He7_-DHAGSjuicnhU... http://secure-web.cisco.com/1mshZJHsrG2WjtWWNRNV7vunyA6LicMMo4DqXl-CgSaJWwHVpzdDUXsf8sRfvrwwkKf_KCQA4CYMRZs_am6IcPJO32Jd2eKl8shUDgQlOekTOscmE92Qtz70DWtJSOKxC8By5T4JuwEig2QC0e1ectPTPZjOGXa_t8ycn5bPjuoIWCqI8uXn86bmPqLVHkPzX-YRnSkCSbiIVsQ8zLNZ4ZNr58YvZl22BNeoGzuyye1eQfd_y4ENFJHQxgCNS7c9JXTBAX_N76Z_PQM9TFwvJPA/http%3A%2F%2Fucrkindlab.com

---

Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/10GU0iklq7S5a2rmbF5WWPuOiSuT2PW57w03wJKzHnXHAaa...

External Email - Use Caution

Yes, I had seen that report and had downloaded the patch, but still got the same error. Are there any other steps I can take?

On Wed, Mar 17, 2021 at 2:59 PM Douglas N. Greve dgreve@mgh.harvard.edu wrote:

This problem is documented (along with a fix) on our release notes https://secure-web.cisco.com/1-guBCff1jWC1GKEt4a1kTf7-FWdC1pS-TRdvmtUoD4S5H1...

On 3/16/2021 3:39 PM, Jordan Mullins wrote:

    External Email - Use Caution

Yes, I used the make_average_subject command. I've attached a text file below of the command line and terminal output from my attempt to average two subjects. I get the same error when I try this with the full sample.

On Tue, Mar 16, 2021 at 9:12 AM Douglas N. Greve dgreve@mgh.harvard.edu wrote:

...

What command are you using? make_average_subject? Send the command line and terminal output

On 3/10/2021 3:53 PM, Jordan Mullins wrote:

    External Email - Use Caution

Hello,

I am trying to create an average subject from a set of subjects, but keep getting an error that says "mghRead(mri/norm.mgz, -1): could not open file". I've read that several others have solved this issue by installing the patch available at *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* http://secure-web.cisco.com/1NjUZjui5nJgDGrr9dhkxnEPaAXJL7_V_mzY5ft38QMMXIUN... http://secure-web.cisco.com/1holHARxUGo27ZLvlj5vX0sbezsRgmRaNdE1T-Z728EASqGjdSamQfU6_udvX8lNDAGu6fMmZJqlcAAuJtuijJsAYfi7M55moSpWy1McHpeqmMGAqqWT-7M-IStYk9Qs2pOnTfoJznpdLsEgVASogVifdHzPfK1t3pQowp_WCXSDaaHhTDzz7qCl-DUbTHTPKKgBhR1NruBOW9_7sIsS86UbWXqE7CaL5hUOQNwrRGh4iX37y5CgC4I9HuJDYQNG_3fPAfLJmyVuWMB5QC4E_jw/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2F6.0.0-patch%2F. I did this, but continue to get the same error. I'm working with Freesurver Version 6.0.0 and MacOS Big Sur Version 11.2.3. I've attached the recon-all.log below, but please let me know if you need additional information.

Any insight on this would be appreciated! Thank you!

Jordan

-- *Jordan L. Mullins, B.A.* Doctoral Student, Department of Psychology University of California, Riverside *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* http://secure-web.cisco.com/1Hb5eBrObpHBXZQD2S7ILWEKBRwR7OK46HlRQPn5nJhb1RK-... http://secure-web.cisco.com/1mshZJHsrG2WjtWWNRNV7vunyA6LicMMo4DqXl-CgSaJWwHVpzdDUXsf8sRfvrwwkKf_KCQA4CYMRZs_am6IcPJO32Jd2eKl8shUDgQlOekTOscmE92Qtz70DWtJSOKxC8By5T4JuwEig2QC0e1ectPTPZjOGXa_t8ycn5bPjuoIWCqI8uXn86bmPqLVHkPzX-YRnSkCSbiIVsQ8zLNZ4ZNr58YvZl22BNeoGzuyye1eQfd_y4ENFJHQxgCNS7c9JXTBAX_N76Z_PQM9TFwvJPA/http%3A%2F%2Fucrkindlab.com

---

Freesurfer mailing listFreesurfer@nmr.mgh.harvard.edu*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/18ekJrFGSKJvrjW_N8XnUIHQ7WEdFV8flsrhGU5xVLbtdoD... https://secure-web.cisco.com/10GU0iklq7S5a2rmbF5WWPuOiSuT2PW57w03wJKzHnXHAaaWd8KsMJi8rngyfKGRQjDmzC1rBydvMO2FJV_gZclLOvvn3AXejxbQk4gqzGftoPot4FME_nPwkB_fGdz2QcM9Cf2U1vXrfu-wTHxwScSA3q38vFLUd_UxDKXnXzl7QgyKmJqjegPnVN_agyvplezM0tk_gZYjRhdB8k-l3VMOjfCR_K-F3hbe-gcdqqEd2CfH4fPrZreUomJC69TkSn9qhGf8Hq2gmD5sNxDJ7Aw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/18ekJrFGSKJvrjW_N8XnUIHQ7WEdFV8flsrhGU5xVLbtdoD... https://secure-web.cisco.com/10GU0iklq7S5a2rmbF5WWPuOiSuT2PW57w03wJKzHnXHAaaWd8KsMJi8rngyfKGRQjDmzC1rBydvMO2FJV_gZclLOvvn3AXejxbQk4gqzGftoPot4FME_nPwkB_fGdz2QcM9Cf2U1vXrfu-wTHxwScSA3q38vFLUd_UxDKXnXzl7QgyKmJqjegPnVN_agyvplezM0tk_gZYjRhdB8k-l3VMOjfCR_K-F3hbe-gcdqqEd2CfH4fPrZreUomJC69TkSn9qhGf8Hq2gmD5sNxDJ7Aw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer

-- *Jordan L. Mullins, B.A.* Doctoral Student, Department of Psychology University of California, Riverside *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* http://secure-web.cisco.com/1Hb5eBrObpHBXZQD2S7ILWEKBRwR7OK46HlRQPn5nJhb1RK-... http://secure-web.cisco.com/1isz3Mv28M3mhtt4WMtIi4EdyCh_c32He7_-DHAGSjuicnhUD4Phk86oGLaSJxouhqOf0M-hFb6lcUnrmoDlbLLiITsg80Di8kvGvyuztTBk6nQUUV2kLNv7ICtukhmYTiE2eF21kaIxR_NqMPOVETiOCMcrAeQZOQhgp5A8y-pXHfrwM3s_SflA_71g2dHic1jehog5HKEYPi5_RjimaHTlj_IIIwu1NHOzHp0ofxSdOcbalhpR-LUeEYVLyv_g8wSnsoyTHxW_vmLsdjIocPw/http%3A%2F%2Fucrkindlab.com

---

Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/18ekJrFGSKJvrjW_N8XnUIHQ7WEdFV8flsrhGU5xVLbtdoD...

External Email - Use Caution

Yes! Results attached.

On Wed, Mar 17, 2021 at 5:54 PM Douglas N. Greve dgreve@mgh.harvard.edu wrote:

Can you run ls -l $FREESURFER_HOME/bin/mri_aparc2aseg $FREESURFER_HOME/bin/make_average_subject and send the result?

Also, the result of which mri_aparc2aseg which make_average_subject

On 3/17/2021 8:36 PM, Jordan Mullins wrote:

    External Email - Use Caution

Yes, I had seen that report and had downloaded the patch, but still got the same error. Are there any other steps I can take?

On Wed, Mar 17, 2021 at 2:59 PM Douglas N. Greve dgreve@mgh.harvard.edu wrote:

...

This problem is documented (along with a fix) on our release notes *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1edBCITcgawUIS-zRnC8VM1AIPGos4K5RQ9rL3tFPx3df0z... https://secure-web.cisco.com/1-guBCff1jWC1GKEt4a1kTf7-FWdC1pS-TRdvmtUoD4S5H1J9YevmGvFyfqiToxhlWyLk9yd2FL9ynWWyw9qrc4GMYipR_nQh2TsGzvrJem91qDSlnoJGUp3ytyyvEyT2e5q0-T2Fe_vnxBPOY0VICsRivaAxfyjEStvnGMVSnIqi0A2H-XZ1L8c6qkEpahiB8VCJNBXV1NivRiX6xTWyRasWhu0yxn3-RD6-RLySEjmUaCVHSjs3m1Zl3XCSNcbhISIuIENnF2bSSgZiJSOpGg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FReleaseNotes

On 3/16/2021 3:39 PM, Jordan Mullins wrote:

    External Email - Use Caution

Yes, I used the make_average_subject command. I've attached a text file below of the command line and terminal output from my attempt to average two subjects. I get the same error when I try this with the full sample.

On Tue, Mar 16, 2021 at 9:12 AM Douglas N. Greve dgreve@mgh.harvard.edu wrote:

...

What command are you using? make_average_subject? Send the command line and terminal output

On 3/10/2021 3:53 PM, Jordan Mullins wrote:

    External Email - Use Caution

Hello,

I am trying to create an average subject from a set of subjects, but keep getting an error that says "mghRead(mri/norm.mgz, -1): could not open file". I've read that several others have solved this issue by installing the patch available at *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* http://secure-web.cisco.com/1t8K97RYlziVlBgu38RYQs4VfxkUfG2F0ku1em0TQ5_1RFDk... http://secure-web.cisco.com/1holHARxUGo27ZLvlj5vX0sbezsRgmRaNdE1T-Z728EASqGjdSamQfU6_udvX8lNDAGu6fMmZJqlcAAuJtuijJsAYfi7M55moSpWy1McHpeqmMGAqqWT-7M-IStYk9Qs2pOnTfoJznpdLsEgVASogVifdHzPfK1t3pQowp_WCXSDaaHhTDzz7qCl-DUbTHTPKKgBhR1NruBOW9_7sIsS86UbWXqE7CaL5hUOQNwrRGh4iX37y5CgC4I9HuJDYQNG_3fPAfLJmyVuWMB5QC4E_jw/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2F6.0.0-patch%2F. I did this, but continue to get the same error. I'm working with Freesurver Version 6.0.0 and MacOS Big Sur Version 11.2.3. I've attached the recon-all.log below, but please let me know if you need additional information.

Any insight on this would be appreciated! Thank you!

Jordan

-- *Jordan L. Mullins, B.A.* Doctoral Student, Department of Psychology University of California, Riverside *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* http://secure-web.cisco.com/1dJju8r2CqbsF9UOo8NNjxFOt8vdI4bOA8cevVR_prTQIqLN... http://secure-web.cisco.com/1mshZJHsrG2WjtWWNRNV7vunyA6LicMMo4DqXl-CgSaJWwHVpzdDUXsf8sRfvrwwkKf_KCQA4CYMRZs_am6IcPJO32Jd2eKl8shUDgQlOekTOscmE92Qtz70DWtJSOKxC8By5T4JuwEig2QC0e1ectPTPZjOGXa_t8ycn5bPjuoIWCqI8uXn86bmPqLVHkPzX-YRnSkCSbiIVsQ8zLNZ4ZNr58YvZl22BNeoGzuyye1eQfd_y4ENFJHQxgCNS7c9JXTBAX_N76Z_PQM9TFwvJPA/http%3A%2F%2Fucrkindlab.com

---

Freesurfer mailing listFreesurfer@nmr.mgh.harvard.edu*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1JQuuoxd2wmMSHjM7nPb7PAKQ3G1Ce2PTNwphBSq5Ol3uVB... https://secure-web.cisco.com/10GU0iklq7S5a2rmbF5WWPuOiSuT2PW57w03wJKzHnXHAaaWd8KsMJi8rngyfKGRQjDmzC1rBydvMO2FJV_gZclLOvvn3AXejxbQk4gqzGftoPot4FME_nPwkB_fGdz2QcM9Cf2U1vXrfu-wTHxwScSA3q38vFLUd_UxDKXnXzl7QgyKmJqjegPnVN_agyvplezM0tk_gZYjRhdB8k-l3VMOjfCR_K-F3hbe-gcdqqEd2CfH4fPrZreUomJC69TkSn9qhGf8Hq2gmD5sNxDJ7Aw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1JQuuoxd2wmMSHjM7nPb7PAKQ3G1Ce2PTNwphBSq5Ol3uVB... https://secure-web.cisco.com/10GU0iklq7S5a2rmbF5WWPuOiSuT2PW57w03wJKzHnXHAaaWd8KsMJi8rngyfKGRQjDmzC1rBydvMO2FJV_gZclLOvvn3AXejxbQk4gqzGftoPot4FME_nPwkB_fGdz2QcM9Cf2U1vXrfu-wTHxwScSA3q38vFLUd_UxDKXnXzl7QgyKmJqjegPnVN_agyvplezM0tk_gZYjRhdB8k-l3VMOjfCR_K-F3hbe-gcdqqEd2CfH4fPrZreUomJC69TkSn9qhGf8Hq2gmD5sNxDJ7Aw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer

-- *Jordan L. Mullins, B.A.* Doctoral Student, Department of Psychology University of California, Riverside *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* http://secure-web.cisco.com/1dJju8r2CqbsF9UOo8NNjxFOt8vdI4bOA8cevVR_prTQIqLN... http://secure-web.cisco.com/1isz3Mv28M3mhtt4WMtIi4EdyCh_c32He7_-DHAGSjuicnhUD4Phk86oGLaSJxouhqOf0M-hFb6lcUnrmoDlbLLiITsg80Di8kvGvyuztTBk6nQUUV2kLNv7ICtukhmYTiE2eF21kaIxR_NqMPOVETiOCMcrAeQZOQhgp5A8y-pXHfrwM3s_SflA_71g2dHic1jehog5HKEYPi5_RjimaHTlj_IIIwu1NHOzHp0ofxSdOcbalhpR-LUeEYVLyv_g8wSnsoyTHxW_vmLsdjIocPw/http%3A%2F%2Fucrkindlab.com

---

Freesurfer mailing listFreesurfer@nmr.mgh.harvard.edu*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1JQuuoxd2wmMSHjM7nPb7PAKQ3G1Ce2PTNwphBSq5Ol3uVB... https://secure-web.cisco.com/18ekJrFGSKJvrjW_N8XnUIHQ7WEdFV8flsrhGU5xVLbtdoDWAxlJAfeCO39Y_Y7SuZrm5gjV7YKn7QP-BYeoOGCzRp6i_wBOLTjPnCFpLjvlem7x58eSM_tr29537KEjV1db8pZthAkbaxjwjstfRnheTmWQrxmQoQ9qOUjSov2NeAQCi6YVEN-5f-s7Pj1BhccSCJe7ctnccQNr1n8HC30M1vQ04bsqqh9e6hznkkRFHmXsKHdCfsHaSr64SLAXTThxzbc5Hy3jCXnNbuTjE7Q/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1JQuuoxd2wmMSHjM7nPb7PAKQ3G1Ce2PTNwphBSq5Ol3uVB... https://secure-web.cisco.com/18ekJrFGSKJvrjW_N8XnUIHQ7WEdFV8flsrhGU5xVLbtdoDWAxlJAfeCO39Y_Y7SuZrm5gjV7YKn7QP-BYeoOGCzRp6i_wBOLTjPnCFpLjvlem7x58eSM_tr29537KEjV1db8pZthAkbaxjwjstfRnheTmWQrxmQoQ9qOUjSov2NeAQCi6YVEN-5f-s7Pj1BhccSCJe7ctnccQNr1n8HC30M1vQ04bsqqh9e6hznkkRFHmXsKHdCfsHaSr64SLAXTThxzbc5Hy3jCXnNbuTjE7Q/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer

-- *Jordan L. Mullins, B.A.* Doctoral Student, Department of Psychology University of California, Riverside *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* http://secure-web.cisco.com/1dJju8r2CqbsF9UOo8NNjxFOt8vdI4bOA8cevVR_prTQIqLN... http://secure-web.cisco.com/1Hb5eBrObpHBXZQD2S7ILWEKBRwR7OK46HlRQPn5nJhb1RK-RjdWkJcRfRQ7GXWEg-inGg35_0zu6O99dGJj3Y8PD_juHovVy61Q0FdPx7DqeUdDfAzy_bx4T2i8AtjXYITBt1FTsolPdZrS1JpBSWgnGw-BigkMI1kVhbHJ6nXXolmhIlo9OSpWZpwiDnGkpJgvXuWSpE8G08RHw6izT-f7A09E9Xdfooja5o0AyNaUZ6JfixfKFSdx_Xtr5JP3Ge38Kd3xiqliWRnmLLhvInw/http%3A%2F%2Fucrkindlab.com

---

Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1JQuuoxd2wmMSHjM7nPb7PAKQ3G1Ce2PTNwphBSq5Ol3uVB...

It looks like you are still using the old make_average_subject as the time stamp is from Jan 19, 2017 (same for mri_aparc2aseg). Can you confirm that those are really the patches?

On 3/29/2021 12:52 PM, Jordan Mullins wrote:

External Email - Use Caution

Hi Douglas,

Just following up on this. Thanks!

On Wed, Mar 17, 2021 at 6:12 PM Jordan Mullins <jordan.mullins@email.ucr.edu mailto:jordan.mullins@email.ucr.edu> wrote:

Yes! Results attached.

On Wed, Mar 17, 2021 at 5:54 PM Douglas N. Greve
<dgreve@mgh.harvard.edu <mailto:dgreve@mgh.harvard.edu>> wrote:


    Can you run
    ls -l $FREESURFER_HOME/bin/mri_aparc2aseg
    $FREESURFER_HOME/bin/make_average_subject
    and send the result?

    Also, the result of
    which mri_aparc2aseg
    which make_average_subject



    On 3/17/2021 8:36 PM, Jordan Mullins wrote:

...

            External Email - Use Caution

    Yes, I had seen that report and had downloaded the patch, but
    still got the same error. Are there any other steps I can take?

    On Wed, Mar 17, 2021 at 2:59 PM Douglas N. Greve
    <dgreve@mgh.harvard.edu <mailto:dgreve@mgh.harvard.edu>> wrote:

        This problem is documented (along with a fix) on our
        release notes
        *MailScanner has detected a possible fraud attempt from
        "secure-web.cisco.com" claiming to be*
        https://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes
        <https://secure-web.cisco.com/1-guBCff1jWC1GKEt4a1kTf7-FWdC1pS-TRdvmtUoD4S5H1J9YevmGvFyfqiToxhlWyLk9yd2FL9ynWWyw9qrc4GMYipR_nQh2TsGzvrJem91qDSlnoJGUp3ytyyvEyT2e5q0-T2Fe_vnxBPOY0VICsRivaAxfyjEStvnGMVSnIqi0A2H-XZ1L8c6qkEpahiB8VCJNBXV1NivRiX6xTWyRasWhu0yxn3-RD6-RLySEjmUaCVHSjs3m1Zl3XCSNcbhISIuIENnF2bSSgZiJSOpGg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FReleaseNotes>


        On 3/16/2021 3:39 PM, Jordan Mullins wrote:

...

                External Email - Use Caution

        Yes, I used the make_average_subject command. I've
        attached a text file below of the command line and
        terminal output from my attempt to average two subjects.
        I get the same error when I try this with the full sample.

        On Tue, Mar 16, 2021 at 9:12 AM Douglas N. Greve
        <dgreve@mgh.harvard.edu <mailto:dgreve@mgh.harvard.edu>>
        wrote:

            What command are you using? make_average_subject?
            Send the command line and terminal output

            On 3/10/2021 3:53 PM, Jordan Mullins wrote:

...

                    External Email - Use Caution

            Hello,

            I am trying to create an average subject from a set
            of subjects, but keep getting an error that says
            "mghRead(mri/norm.mgz, -1): could not open file".
            I've read that several others have solved this
            issue by installing the patch available at
            *MailScanner has detected a possible fraud attempt
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            http://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/
            <http://secure-web.cisco.com/1holHARxUGo27ZLvlj5vX0sbezsRgmRaNdE1T-Z728EASqGjdSamQfU6_udvX8lNDAGu6fMmZJqlcAAuJtuijJsAYfi7M55moSpWy1McHpeqmMGAqqWT-7M-IStYk9Qs2pOnTfoJznpdLsEgVASogVifdHzPfK1t3pQowp_WCXSDaaHhTDzz7qCl-DUbTHTPKKgBhR1NruBOW9_7sIsS86UbWXqE7CaL5hUOQNwrRGh4iX37y5CgC4I9HuJDYQNG_3fPAfLJmyVuWMB5QC4E_jw/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2F6.0.0-patch%2F>.
            I did this, but continue to get the same error. I'm
            working with Freesurver Version 6.0.0 and MacOS Big
            Sur Version 11.2.3. I've attached the recon-all.log
            below, but please let me know if you need
            additional information.

            Any insight on this would be appreciated! Thank you!

            Jordan

            -- 
            *Jordan L. Mullins, B.A.*
            Doctoral Student, Department of Psychology
            University of California, Riverside
            *MailScanner has detected a possible fraud attempt
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        -- 
        *Jordan L. Mullins, B.A.*
        Doctoral Student, Department of Psychology
        University of California, Riverside
        *MailScanner has detected a possible fraud attempt from
        "secure-web.cisco.com" claiming to be*
        http://ucrkindlab.com
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    -- 
    *Jordan L. Mullins, B.A.*
    Doctoral Student, Department of Psychology
    University of California, Riverside
    *MailScanner has detected a possible fraud attempt from
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-- 
*Jordan L. Mullins, B.A.*
Doctoral Student, Department of Psychology
University of California, Riverside
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-- *Jordan L. Mullins, B.A.* Doctoral Student, Department of Psychology University of California, Riverside *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* http://ucrkindlab.com http://secure-web.cisco.com/1fpwAcAdfpPcgXwG26yDXqSP95kASeRHLMrJFeIUyDibUdqUVH2p0VRezzhwnATWC6T9xIybL_yMoJMsNYkzaaVhiVJdvQu1-4tRXyaLHYAOvnAYvGKVrX8cOnPzcAg5idnKgh43DE29cfOdy3c4LUI1r_TID4tgkTklyuy2ABBPRZ2zSpiirU0OI5NjaFLgnMDI_7ogEQ9p2DJ4NhEZz8pjoQRTmM3jYxd9v5Zi-6dvsU6pgZDmP-fTnealh-Gpw3Ga8ejexqF6eJ9hhYpEf2w/http%3A%2F%2Fucrkindlab.com

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

When I look at the README, this is the contents. Are you looking at https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/README ?

Download make_average_subject and the platform-specific version of mri_aparc2aseg from this directory and move them to your freesurfer bin directory via:

mv make_average_subject $FREESURFER_HOME/bin mv mri_aparc2aseg.platform $FREESURFER_HOME/bin/mri_aparc2aseg chmod +x $FREESURFER_HOME/bin/mri_aparc2aseg $FREESURFER_HOME/bin/make_average_subject

We currently do not have a mac build of mri_aparc2aseg, and we recommend downloading the freesurfer dev release to resolve this issue.

On 4/6/2021 6:29 PM, Jordan Mullins wrote:

External Email - Use Caution

The patch (see text below) only directed me to replace a file in the freesurfer/gcc/lib directory, which I did. Do I also need to replace the make_average_subject and mri_aparc2aseg files in my freesurfer bin?

/To patch the existing 6.0.0 release you may need administrator privileges to do the following:/ / / /1) Remove your existing Freeview.app application bundle by sending it to the trash (and then emtying the trash)./ /   You can also do this from the terminal by cd'ing to the top level ./freesurfer subdirectory and then doing,/ /   "rm -rf Freeview.app". / / / /2) Copy the new Freeview.app.zip to where your old Freeview.app was located aund uncompress it (so it becomes/ /   the replacement Freeview.app in your current freesrufer installation)./ / / /3) Remove ./freesurfer/lib/gcc/lib/libgomp.1.dylib from your existing freesurfer installation./ / / /4) Copy the ./freesurfer/lib/gcc/lib/libgomp.1.dylib from the patch archive to /freesurfer/lib/gcc/lib in your current/ /   freesurfer installtion./ / / /5) Try running the Freeview.app and loading a volume with it./

On Mon, Apr 5, 2021 at 6:43 AM Douglas N. Greve <dgreve@mgh.harvard.edu mailto:dgreve@mgh.harvard.edu> wrote:

It looks like you are still using the old make_average_subject as
the time stamp is from Jan 19, 2017 (same for mri_aparc2aseg). Can
you confirm that those are really the patches?

On 3/29/2021 12:52 PM, Jordan Mullins wrote:

...

        External Email - Use Caution

Hi Douglas,

Just following up on this. Thanks!

On Wed, Mar 17, 2021 at 6:12 PM Jordan Mullins
<jordan.mullins@email.ucr.edu
<mailto:jordan.mullins@email.ucr.edu>> wrote:

    Yes! Results attached.

    On Wed, Mar 17, 2021 at 5:54 PM Douglas N. Greve
    <dgreve@mgh.harvard.edu <mailto:dgreve@mgh.harvard.edu>> wrote:


        Can you run
        ls -l $FREESURFER_HOME/bin/mri_aparc2aseg
        $FREESURFER_HOME/bin/make_average_subject
        and send the result?

        Also, the result of
        which mri_aparc2aseg
        which make_average_subject



        On 3/17/2021 8:36 PM, Jordan Mullins wrote:

...

                External Email - Use Caution

        Yes, I had seen that report and had downloaded the
        patch, but still got the same error. Are there any other
        steps I can take?

        On Wed, Mar 17, 2021 at 2:59 PM Douglas N. Greve
        <dgreve@mgh.harvard.edu <mailto:dgreve@mgh.harvard.edu>>
        wrote:

            This problem is documented (along with a fix) on our
            release notes
            *MailScanner has detected a possible fraud attempt
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            On 3/16/2021 3:39 PM, Jordan Mullins wrote:

...

                    External Email - Use Caution

            Yes, I used the make_average_subject command. I've
            attached a text file below of the command line and
            terminal output from my attempt to average two
            subjects. I get the same error when I try this with
            the full sample.

            On Tue, Mar 16, 2021 at 9:12 AM Douglas N. Greve
            <dgreve@mgh.harvard.edu
            <mailto:dgreve@mgh.harvard.edu>> wrote:

                What command are you using?
                make_average_subject? Send the command line and
                terminal output

                On 3/10/2021 3:53 PM, Jordan Mullins wrote:

...

                        External Email - Use Caution

                Hello,

                I am trying to create an average subject from
                a set of subjects, but keep getting an error
                that says "mghRead(mri/norm.mgz, -1): could
                not open file". I've read that several others
                have solved this issue by installing the patch
                available at *MailScanner has detected a
                possible fraud attempt from
                "secure-web.cisco.com" claiming to be*
                http://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/
                <http://secure-web.cisco.com/1holHARxUGo27ZLvlj5vX0sbezsRgmRaNdE1T-Z728EASqGjdSamQfU6_udvX8lNDAGu6fMmZJqlcAAuJtuijJsAYfi7M55moSpWy1McHpeqmMGAqqWT-7M-IStYk9Qs2pOnTfoJznpdLsEgVASogVifdHzPfK1t3pQowp_WCXSDaaHhTDzz7qCl-DUbTHTPKKgBhR1NruBOW9_7sIsS86UbWXqE7CaL5hUOQNwrRGh4iX37y5CgC4I9HuJDYQNG_3fPAfLJmyVuWMB5QC4E_jw/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2F6.0.0-patch%2F>.
                I did this, but continue to get the same
                error. I'm working with Freesurver Version
                6.0.0 and MacOS Big Sur Version 11.2.3. I've
                attached the recon-all.log below, but please
                let me know if you need additional information.

                Any insight on this would be appreciated!
                Thank you!

                Jordan

                -- 
                *Jordan L. Mullins, B.A.*
                Doctoral Student, Department of Psychology
                University of California, Riverside
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            -- 
            *Jordan L. Mullins, B.A.*
            Doctoral Student, Department of Psychology
            University of California, Riverside
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        -- 
        *Jordan L. Mullins, B.A.*
        Doctoral Student, Department of Psychology
        University of California, Riverside
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    -- 
    *Jordan L. Mullins, B.A.*
    Doctoral Student, Department of Psychology
    University of California, Riverside
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-- 
*Jordan L. Mullins, B.A.*
Doctoral Student, Department of Psychology
University of California, Riverside
*MailScanner has detected a possible fraud attempt from
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-- *Jordan L. Mullins, B.A.* Doctoral Student, Department of Psychology University of California, Riverside *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* http://ucrkindlab.com http://secure-web.cisco.com/1HndwHz1nnz7P_mg25bNF2MQLKYcqJ-68mOPsbWqngGVUNVn31eWZqb_pTwr_MM0E5sdNHbgGu4uit0dbN8iFyCjdiQqnpNX_Hra9unWrnFm8sZV0I8JvaLiTPOaDLkAPvvtq3EdEYZIQdnsZes9hJ4ZomEi77-L6aUcCpAENkok8DYPOuukKW2A6FLvca0_mtb_-7w9-YMkaNr2KyL4dzvy7qVhlDGXmPl9GBUmAq7zDT1NNrMqLQDJVQ6zv2zuM/http%3A%2F%2Fucrkindlab.com

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