Dear experts, we run this command in a file of MRI 3D .nii :
recon-all -force -all -notal-check -i /my_directory_input/my_file.nii -subjid my_directory_output
and i get the attached image of output for a single time point, after 40 hours of elaboration. We don't understand why there isn't the right side of the brain.
Any suggestions?
Thank you all.
Dear experts, we run this command in a file of MRI 3D .nii :
recon-all -force -all -notal-check -i /my_directory_input/my_file.nii -subjid my_directory_output
and i get the attached image of output for a single time point, after 40 hours of elaboration. We don't understand why there isn't the right side of the brain. Normal processing time is so high? What can I centre this image?
Any suggestions?
2010/7/21 Michele Placci michele.placci@gmail.com
Dear experts, we run this command in a file of MRI 3D .nii :
recon-all -force -all -notal-check -i /my_directory_input/my_file.nii-subjid my_directory_output
and i get the attached image of output for a single time point, after 40 hours of elaboration. We don't understand why there isn't the right side of the brain.
Any suggestions?
Thank you all.
2010/7/23 Michele Placci michele.placci@gmail.com
Dear experts, we run this command in a file of MRI 3D .nii :
recon-all -force -all -notal-check -i /my_directory_input/my_file.nii-subjid my_directory_output
and i get the attached image of output for a single time point, after 40 hours of elaboration. We don't understand why there isn't the right side of the brain. Normal processing time is so high? What can I centre this image?
Any suggestions?
2010/7/21 Michele Placci michele.placci@gmail.com
Dear experts, we run this command in a file of MRI 3D .nii :
recon-all -force -all -notal-check -i /my_directory_input/my_file.nii-subjid my_directory_output
and i get the attached image of output for a single time point, after 40 hours of elaboration. We don't understand why there isn't the right side of the brain.
Any suggestions?
Thank you all.
Hi Michele, have you gone through trouble shooting steps described on our wiki yet?
doug
Michele Placci wrote:
2010/7/23 Michele Placci <michele.placci@gmail.com mailto:michele.placci@gmail.com>
Dear experts, we run this command in a file of MRI 3D .nii : recon-all -force -all -notal-check -i /my_directory_input/my_file.nii -subjid my_directory_output and i get the attached image of output for a single time point, after 40 hours of elaboration. We don't understand why there isn't the right side of the brain. Normal processing time is so high? What can I centre this image? Any suggestions? 2010/7/21 Michele Placci <michele.placci@gmail.com <mailto:michele.placci@gmail.com>> Dear experts, we run this command in a file of MRI 3D .nii : recon-all -force -all -notal-check -i /my_directory_input/my_file.nii -subjid my_directory_output and i get the attached image of output for a single time point, after 40 hours of elaboration. We don't understand why there isn't the right side of the brain. Any suggestions? Thank you all.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
hmm, not sure how you mae this image, but it looks *veyr* noisy. You'll need to try fixing the watershed skull stripping, but the ventricles may be too big in any case.
cheers bruce
On Fri, 23 Jul 2010, Michele Placci wrote:
2010/7/23 Michele Placci michele.placci@gmail.com
Dear experts, we run this command in a file of MRI 3D .nii :
recon-all -force -all -notal-check -i /my_directory_input/my_file.nii-subjid my_directory_output
and i get the attached image of output for a single time point, after 40 hours of elaboration. We don't understand why there isn't the right side of the brain. Normal processing time is so high? What can I centre this image?
Any suggestions?
2010/7/21 Michele Placci michele.placci@gmail.com
Dear experts, we run this command in a file of MRI 3D .nii :
recon-all -force -all -notal-check -i /my_directory_input/my_file.nii-subjid my_directory_output
and i get the attached image of output for a single time point, after 40 hours of elaboration. We don't understand why there isn't the right side of the brain.
Any suggestions?
Thank you all.
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Douglas N Greve -
Michele Placci