External Email - Use Caution
Please let us know what FREESURFER_HOME is set to, and what (Linux or Mac) operating system your machine is running. If you are on a Mac please indicate if it is one of the current silicon Macs (M1, M2, chip) or one of the older Intel Macs. - R.
On Aug 20, 2023, at 14:57, Jacobs, Heidi I.,PHD <HJACOBS@mgh.harvard.edu> wrote: External Email - Use Caution Hello FreeSurfer team, I am trying to run the sclimbic tool on our FreeSurfer processed images (from the Martinos center).For some unknown reason I keep getting the same problem:Excluding seg [853]Using CPUIllegal instruction (core dumped) Not sure what this means?I have sourced /usr/local/freesurfer/nmr-dev-env and set the SUBJECTS_DIR correctly.I tried with the - - s option referring to the FreeSurfer processed subject as well as the - - i option, referring to the orig.mgz image.Using the nifti image or the mgz image doesn’t make a difference either. Any suggestions on what the problem may be or how to resolve this? Thank youAll the bestHeidi_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
FREESURFER_HOME was set to
/autofs/space/locus_001/users/mv1048/LC_HYP/FS6/
(the FS6 folders contains our folders of subjects processed with FreeSurfer)
I am working remotely on a Linux (Centos 7.9.2009) via screen sharing on my Mac (Intel, OS 10.15.7)
Thank you Heidi
From: fsbuild fsbuild@contbay.com Date: Sunday, 20 August 2023 at 17:04 To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Cc: "Jacobs, Heidi I.,PHD" HJACOBS@mgh.harvard.edu Subject: Re: [Freesurfer] ScLimbic issue
External Email - Use Caution Please let us know what FREESURFER_HOME is set to, and what (Linux or Mac) operating system your machine is running. If you are on a Mac please indicate if it is one of the current silicon Macs (M1, M2, chip) or one of the older Intel Macs.
- R.
On Aug 20, 2023, at 14:57, Jacobs, Heidi I.,PHD HJACOBS@mgh.harvard.edu wrote:
External Email - Use Caution
Hello FreeSurfer team,
I am trying to run the sclimbic tool on our FreeSurfer processed images (from the Martinos center). For some unknown reason I keep getting the same problem: Excluding seg [853] Using CPU Illegal instruction (core dumped)
Not sure what this means? I have sourced /usr/local/freesurfer/nmr-dev-env and set the SUBJECTS_DIR correctly. I tried with the - - s option referring to the FreeSurfer processed subject as well as the - - i option, referring to the orig.mgz image. Using the nifti image or the mgz image doesn’t make a difference either.
Any suggestions on what the problem may be or how to resolve this?
Thank you All the best Heidi _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1uVc02bINQvClJ5Szxa5hS_E-xve1dkkfPZqHn8hu9PuMfY...https://secure-web.cisco.com/1PAGEFAlTZu1IheQpKuj7fUfOSrmCCOHGX4P3X6ik6CRFha0-2qCNsC-ZOdQaEv7IlLUiKkPCi4agVzVNBxunq51DuPTn00KUMgfTuU9fSx9mkfBn7iuJGUA12UYpI8-pUefiWLlFNPXWv01FMmSYRvqm_8JCBbnmeuJJIj8niP4LeZyae-5uwv4WiQHSm8LKa3t_BfZfacIQffHQ5nVvGgETwHnQj_II2NoSMcvQLMEqk4_nOCh1UpK5mvv3q5E6UIByjkwwYbtdBv4xGgx_quTIZslQLW4jwZOqSle83HneC9IQC04CWn5HYY2gw05N/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
freesurfer@nmr.mgh.harvard.edu
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fsbuild -
Jacobs, Heidi I.,PHD