I'm not sure what the problem is. That recon-all.log file is for fsaverage and it says that it finished without error. Can you be more specific about the problem?

On 8/21/19 10:43 PM, liuxingze1993 wrote:

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Hello，Dear FreeSurfer Developers,

I’m a doctoral student from Xiangya 2^nd Hospital of Central South University, and also a beginner to FreeSurfer. I'm attempting to follow the steps descripted on ‘Practice Working with Data’ (http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Practice) with our own data, but I’ve met the same problem several times when I programing the command ‘recon-all -all -i 61492283 -s Sub219’:

(**ps: 61492283 is the T1 file I found after programing the command 'dcmunpack -src . -scanonly.log')

SUBJECTS_DIR   /media/dell/AA32E/Data_prac/219/20181211/19470000

(**PS: 19470000 is the folder where the T1 located)

FREESURFER_HOME /usr/local/freesurfer

Loading source label

Invalid argument

ERROR reading /media/dell/AA32E/Data_prac/219/20181211/19470000/fsaverage/label/lh.BA1_exvivo.label

recon-all -s Sub219 exited with ERRORS at <local time here>

I've searched the ‘lh.BA1_exvivo.label’ file in the related path and no such file here.

1. FreeSurfer version:

freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c

2. Platform: Ubuntu14.04 LTS

3. uname -a: Linux dell 3.13.0-24-generic #46-Ubuntu SMP Thu Apr 10

19:11:08 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux

4. recon-all.log: see attached

Thank u for viewing, and I will be waiting here for your professional advice !

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