External Email - Use Caution
Dear Freesurfer experts,
I am trying to use the aparcstats2table command (FSurfer V.6) in order to export the thickness measures but there should be an issue with my python version. This is the complete output:
aparcstats2table --hemi lh --subjects 4166 --meas thickness --parc aparc.a2009s --tablefile thickness.txt
Usage: python [options] python: error: no such option: --hemi
Could you give me some suggestions to solve this problem?
Thank you very much in advance.
Best regards,
Hello Miguel,
There may be an issue with the version of python you are sourcing. The utility requires python 3.6+.
To check your version you can run: 'python --version'
If your version of python is not 3.6+ you will need to source an updated version of python.
Best, Jackson ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Miguel Ángel Rivas Fernández miguelrivasfdez@gmail.com Sent: Monday, September 20, 2021 4:44 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Freesurfer V6: aparcstats2table command python issues
External Email - Use Caution
Dear Freesurfer experts,
I am trying to use the aparcstats2table command (FSurfer V.6) in order to export the thickness measures but there should be an issue with my python version. This is the complete output:
aparcstats2table --hemi lh --subjects 4166 --meas thickness --parc aparc.a2009s --tablefile thickness.txt
Usage: python [options] python: error: no such option: --hemi
Could you give me some suggestions to solve this problem?
Thank you very much in advance.
Best regards, -- Miguel Ángel Rivas Fernández
freesurfer@nmr.mgh.harvard.edu