Checking for (invalid) multi-frame inputs... ERROR: input(s) cannot have multiple frames!
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Dear Freesurfer experts,
I get this error when I am running FreeSurfer.
Checking for (invalid) multi-frame inputs... ERROR: input(s) cannot have multiple frames! /home/knutjb/subjects/test/mri/orig/001.mgz has 4 frames If this is a multi-frame MEMPRAGE image, use mri_concat --rms to combine echo frames.
It has a t1_sag_mprage sequence, and it also give this waning
filesare not found to be different and cannot be sorted.
In addition, I get these errors when importing using recon-all -i file -all -s test
INFO: Found 770 files in //20210224_151919/5_t1_sag_mprage INFO: Scanning for Series Number 5 Scanning Directory INFO: found 768 files in series INFO: loading series header info.
When I am running mri_concat --rms I am able to run recon-all -all.
Your sincerely,
Knut Jørgen Bjuland
I'm not sure what question you are asking
On 2/25/2022 1:17 PM, Knut J Bjuland wrote:
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DearFreesurferexperts,
IgetthiserrorwhenIamrunning FreeSurfer.
Checkingfor(invalid)multi-frameinputs... ERROR:input(s)cannothavemultipleframes! /home/knutjb/subjects/test/mri/orig/001.mgzhas4frames Ifthisisamulti-frameMEMPRAGEimage, usemri_concat--rmstocombineechoframes.
Ithasat1_sag_mpragesequence,anditalsogivethis waning
filesarenotfoundtobedifferentandcannotbesorted.
Inaddition,Igettheseerrorswhenimportingusingrecon-all-ifile-all-stest
INFO:Found770filesin//20210224_151919/5_t1_sag_mprage INFO:ScanningforSeriesNumber5 ScanningDirectory INFO:found768filesinseries INFO:loadingseriesheaderinfo.
WhenIamrunningmri_concat--rmsIamabletorunrecon-all-all.
Yoursincerely,
KnutJørgenBjuland
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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What do you recommend should I use dcm2nixx or use mri_concat in order to deal with multi frame t1 mri?
Knut j Bjuland Sent from my iPad
On 25 Feb 2022, at 19:47, Douglas N. Greve dgreve@mgh.harvard.edu wrote:
I'm not sure what question you are asking
On 2/25/2022 1:17 PM, Knut J Bjuland wrote:
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Dear Freesurfer experts,
I get this error when I am running FreeSurfer.
Checking for (invalid) multi-frame inputs... ERROR: input(s) cannot have multiple frames! /home/knutjb/subjects/test/mri/orig/001.mgz has 4 frames If this is a multi-frame MEMPRAGE image, use mri_concat --rms to combine echo frames.
It has a t1_sag_mprage sequence, and it also give this waning
filesare not found to be different and cannot be sorted.
In addition, I get these errors when importing using recon-all -i file -all -s test
INFO: Found 770 files in //20210224_151919/5_t1_sag_mprage INFO: Scanning for Series Number 5 Scanning Directory INFO: found 768 files in series INFO: loading series header info.
When I am running mri_concat --rms I am able to run recon-all -all.
Your sincerely,
Knut Jørgen Bjuland
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why are there multiple frames? What it in them? ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Knut J Bjuland knutjorgen@outlook.com Sent: Saturday, February 26, 2022 1:33 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Checking for (invalid) multi-frame inputs... ERROR: input(s) cannot have multiple frames!
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What do you recommend should I use dcm2nixx or use mri_concat in order to deal with multi frame t1 mri?
Knut j Bjuland Sent from my iPad
On 25 Feb 2022, at 19:47, Douglas N. Greve dgreve@mgh.harvard.edu wrote:
I'm not sure what question you are asking
On 2/25/2022 1:17 PM, Knut J Bjuland wrote:
External Email - Use Caution
Dear Freesurfer experts,
I get this error when I am running FreeSurfer.
Checking for (invalid) multi-frame inputs... ERROR: input(s) cannot have multiple frames! /home/knutjb/subjects/test/mri/orig/001.mgz has 4 frames If this is a multi-frame MEMPRAGE image, use mri_concat --rms to combine echo frames.
It has a t1_sag_mprage sequence, and it also give this waning
filesare not found to be different and cannot be sorted.
In addition, I get these errors when importing using recon-all -i file -all -s test
INFO: Found 770 files in //20210224_151919/5_t1_sag_mprage INFO: Scanning for Series Number 5 Scanning Directory INFO: found 768 files in series INFO: loading series header info.
When I am running mri_concat --rms I am able to run recon-all -all.
Your sincerely,
Knut Jørgen Bjuland
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferhttps://secure-web.cisco.com/1-rHGWzGA9KwAzIRmp1dIVv9zQW8QBBycAD-YfhsLUlWmDGePPlyUA650-4jIA5SlMXfU3A8ld3FhdQuR-jhzfkk9bGIkLCa16_3EDaCOdEY0CSI9ZpN2D5eXNY-bRnH75G3aErci5C28LY62KKvUwYNvqPpCCHn_mpwdTcT6B1VqnTAxMUfToJwDr3Yb6UYdgP3jtglwPFEYgyjh36mzqjEkQaq2aK1_oFcx5EXdxvih8k_BQt6obp71zP8OgZeJtZegHNe9lN_V4DXEhkEwvnl2mtSq7GVH61A7h23aqxR32Bo80RnckDOheedlDyw6fBDwcFj4yHxK_8bsIST24w/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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Hi
I found out that some had made duplicated copy of the same dicom serie and I sorted it out with dcm2niix.
Best Regards
Knut Jørgen ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edu Sent: Friday, February 25, 2022 7:46 PM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Checking for (invalid) multi-frame inputs... ERROR: input(s) cannot have multiple frames!
I'm not sure what question you are asking
On 2/25/2022 1:17 PM, Knut J Bjuland wrote:
External Email - Use Caution
Dear Freesurfer experts,
I get this error when I am running FreeSurfer.
Checking for (invalid) multi-frame inputs... ERROR: input(s) cannot have multiple frames! /home/knutjb/subjects/test/mri/orig/001.mgz has 4 frames If this is a multi-frame MEMPRAGE image, use mri_concat --rms to combine echo frames.
It has a t1_sag_mprage sequence, and it also give this waning
filesare not found to be different and cannot be sorted.
In addition, I get these errors when importing using recon-all -i file -all -s test
INFO: Found 770 files in //20210224_151919/5_t1_sag_mprage INFO: Scanning for Series Number 5 Scanning Directory INFO: found 768 files in series INFO: loading series header info.
When I am running mri_concat --rms I am able to run recon-all -all.
Your sincerely,
Knut Jørgen Bjuland
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freesurfer@nmr.mgh.harvard.edu
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Douglas N. Greve -
Fischl, Bruce -
Knut J Bjuland