what are the source files ("all files"). What data type, value range, where did they come from?

On 10/05/2016 04:48 PM, Trisanna Sprung-Much wrote:

Hi Doug

So, of course now it works without --keep-filetype... :p it looks pretty much the same was when I use --keep-filetype.

However, the values of Min and Max are still odd (out of 256) - see snapshot

Trisanna

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

On Wed, Oct 5, 2016 at 4:23 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:

Depending upon the type of the data, the --keep-datatype may mess
things
up quite a bit. What happens if you don't include that? It will not
create an annotation. maybe you mean some other file type?


On 10/05/2016 02:36 PM, Trisanna Sprung-Much wrote:
>
> Hi Doug
>
> I spoke with you at the Freesurfer tutorial last week about using
> mri_average to average my sulcal labels and get a probability map on
> fsaverage. You had suggested using "mri_concat" instead, which is a
> newer command. So, I performed the following command:
>
> *mri_concat all files --o output.mgz --mean --keep-datatype*
>
> I had to put --keep-datatype or else it tried to create an annot
file.
>
> This worked just fine.
>
> My question then is concerning *the min and max values *when this
> average is overlayed in Freeview. See the snapshot attached. The
> values seem to be based on 256 instead of percentage and this is
what
> happens when I used "mri_average" without specifying the "-p". Is
> there a way to illustrate the values in percentage in a similar way
> with mri_concat?
>
> Many thanks!
>
> Trisanna
>
>
> --
> Ph.D. Candidate
> McGill University
> Integrated Program in Neuroscience
> Psychology
>
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>

--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
Phone Number: 617-724-2358 <tel:617-724-2358>
Fax: 617-726-7422 <tel:617-726-7422>

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
Outgoing:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>

_______________________________________________
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what is a labeled vertex? What file format? mgz? annot?

On 10/05/2016 05:03 PM, Trisanna Sprung-Much wrote:

the source files are labelled vertices from 20 subjects:

-T1s were labelled using an MNI software -Surfaces were created in FreeSurfer and surface overlays of the labels were created using mri_vol2surf -Surface overlays were registered to fsaverage using mri_surf2surf and then averaged to create a probability map, originally using "mri_average"

So, essentially the overlays are binary files of my labels I believe

• I can send one over if you wish.

Trisanna

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

On Wed, Oct 5, 2016 at 4:52 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:

what are the source files ("all files"). What data type, value range,
where did they come from?


On 10/05/2016 04:48 PM, Trisanna Sprung-Much wrote:
> Hi Doug
>
> So, of course now it works without --keep-filetype... :p it looks
> pretty much the same was when I use --keep-filetype.
>
> However, the values of Min and Max are still odd (out of 256) - see
> snapshot
>
> Trisanna
>
>
>
>
>
> --
> Ph.D. Candidate
> McGill University
> Integrated Program in Neuroscience
> Psychology
>
>
> On Wed, Oct 5, 2016 at 4:23 PM, Douglas N Greve
> <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>> wrote:
>
>     Depending upon the type of the data, the --keep-datatype may
mess
>     things
>     up quite a bit. What happens if you don't include that? It
will not
>     create an annotation. maybe you mean some other file type?
>
>
>     On 10/05/2016 02:36 PM, Trisanna Sprung-Much wrote:
>     >
>     > Hi Doug
>     >
>     > I spoke with you at the Freesurfer tutorial last week
about using
>     > mri_average to average my sulcal labels and get a
probability map on
>     > fsaverage. You had suggested using "mri_concat" instead,
which is a
>     > newer command. So, I performed the following command:
>     >
>     > *mri_concat all files --o output.mgz --mean --keep-datatype*
>     >
>     > I had to put --keep-datatype or else it tried to create an
annot
>     file.
>     >
>     > This worked just fine.
>     >
>     > My question then is concerning *the min and max values
*when this
>     > average is overlayed in Freeview. See the snapshot
attached. The
>     > values seem to be based on 256 instead of percentage and
this is
>     what
>     > happens when I used "mri_average" without specifying the
"-p". Is
>     > there a way to illustrate the values in percentage in a
similar way
>     > with mri_concat?
>     >
>     > Many thanks!
>     >
>     > Trisanna
>     >
>     >
>     > --
>     > Ph.D. Candidate
>     > McGill University
>     > Integrated Program in Neuroscience
>     > Psychology
>     >
>     >
>     >
>     > _______________________________________________
>     > Freesurfer mailing list
>     > Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     >
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>
>     --
>     Douglas N. Greve, Ph.D.
>     MGH-NMR Center
> greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>
>     Phone Number: 617-724-2358 <tel:617-724-2358>
<tel:617-724-2358 <tel:617-724-2358>>
>     Fax: 617-726-7422 <tel:617-726-7422> <tel:617-726-7422
<tel:617-726-7422>>
>
>     Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>     Outgoing:
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>     <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>
>     _______________________________________________
>     Freesurfer mailing list
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<mailto:Freesurfer@nmr.mgh.harvard.edu>
<mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>   
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>
>
>     The information in this e-mail is intended only for the
person to
>     whom it is
>     addressed. If you believe this e-mail was sent to you in
error and
>     the e-mail
>     contains patient information, please contact the Partners
>     Compliance HelpLine at
> http://www.partners.org/complianceline
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
Phone Number: 617-724-2358 <tel:617-724-2358>
Fax: 617-726-7422 <tel:617-726-7422>

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
Outgoing:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>

---

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What are the pixel values in the mgz file? They should be binary, ie, 1=in a label, 0 = out of label

On 10/6/16 10:22 AM, Trisanna Sprung-Much wrote:

Overlays in .mgz format using mri_vol2surf

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

On Wed, Oct 5, 2016 at 5:56 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:

what is a labeled vertex? What file format? mgz? annot?


On 10/05/2016 05:03 PM, Trisanna Sprung-Much wrote:
> the source files are labelled vertices from 20 subjects:
>
> -T1s were labelled using an MNI software
> -Surfaces were created in FreeSurfer and surface overlays of the
> labels were created using mri_vol2surf
> -Surface overlays were registered to fsaverage using
mri_surf2surf and
> then averaged to create a probability map, originally using
"mri_average"
>
> So, essentially the overlays are binary files of my labels I believe
> - I can send one over if you wish.
>
> Trisanna
>
>
> --
> Ph.D. Candidate
> McGill University
> Integrated Program in Neuroscience
> Psychology
>
>
> On Wed, Oct 5, 2016 at 4:52 PM, Douglas N Greve
> <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>> wrote:
>
>     what are the source files ("all files"). What data type,
value range,
>     where did they come from?
>
>
>     On 10/05/2016 04:48 PM, Trisanna Sprung-Much wrote:
>     > Hi Doug
>     >
>     > So, of course now it works without --keep-filetype... :p
it looks
>     > pretty much the same was when I use --keep-filetype.
>     >
>     > However, the values of Min and Max are still odd (out of
256) - see
>     > snapshot
>     >
>     > Trisanna
>     >
>     >
>     >
>     >
>     >
>     > --
>     > Ph.D. Candidate
>     > McGill University
>     > Integrated Program in Neuroscience
>     > Psychology
>     >
>     >
>     > On Wed, Oct 5, 2016 at 4:23 PM, Douglas N Greve
>     > <greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
>     >
>     >     Depending upon the type of the data, the
--keep-datatype may
>     mess
>     >     things
>     >     up quite a bit. What happens if you don't include that? It
>     will not
>     >     create an annotation. maybe you mean some other file type?
>     >
>     >
>     >     On 10/05/2016 02:36 PM, Trisanna Sprung-Much wrote:
>     >     >
>     >     > Hi Doug
>     >     >
>     >     > I spoke with you at the Freesurfer tutorial last week
>     about using
>     >     > mri_average to average my sulcal labels and get a
>     probability map on
>     >     > fsaverage. You had suggested using "mri_concat" instead,
>     which is a
>     >     > newer command. So, I performed the following command:
>     >     >
>     >     > *mri_concat all files --o output.mgz --mean
--keep-datatype*
>     >     >
>     >     > I had to put --keep-datatype or else it tried to
create an
>     annot
>     >     file.
>     >     >
>     >     > This worked just fine.
>     >     >
>     >     > My question then is concerning *the min and max values
>     *when this
>     >     > average is overlayed in Freeview. See the snapshot
>     attached. The
>     >     > values seem to be based on 256 instead of percentage and
>     this is
>     >     what
>     >     > happens when I used "mri_average" without specifying the
>     "-p". Is
>     >     > there a way to illustrate the values in percentage in a
>     similar way
>     >     > with mri_concat?
>     >     >
>     >     > Many thanks!
>     >     >
>     >     > Trisanna
>     >     >
>     >     >
>     >     > --
>     >     > Ph.D. Candidate
>     >     > McGill University
>     >     > Integrated Program in Neuroscience
>     >     > Psychology
>     >     >
>     >     >
>     >     >
>     >     > _______________________________________________
>     >     > Freesurfer mailing list
>     >     > Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>     >     >
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>   
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >   
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>   
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>     >
>     >     --
>     >     Douglas N. Greve, Ph.D.
>     >     MGH-NMR Center
>     > greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>>
>     >     Phone Number:617-724-2358 <tel:617-724-2358> <tel:617-724-2358 <tel:617-724-2358>>
>     <tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358
<tel:617-724-2358>>>
>     >     Fax: 617-726-7422 <tel:617-726-7422> <tel:617-726-7422
<tel:617-726-7422>> <tel:617-726-7422 <tel:617-726-7422>
>     <tel:617-726-7422 <tel:617-726-7422>>>
>     >
>     >     Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
>     >     FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>
>     > www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>     >   
 <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>
>     >     Outgoing:
>     >
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>   
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>     >   
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>   
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>
>     >
>     >     _______________________________________________
>     >     Freesurfer mailing list
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<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>     >
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 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
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>     
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>   
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>     >
>     >
>     >     The information in this e-mail is intended only for the
>     person to
>     >     whom it is
>     >     addressed. If you believe this e-mail was sent to you in
>     error and
>     >     the e-mail
>     >     contains patient information, please contact the Partners
>     >     Compliance HelpLine at
>     > http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>     <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>
>     >     <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>     <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>> . If the e-mail was sent
>     >     to you in error
>     >     but does not contain patient information, please
contact the
>     >     sender and properly
>     >     dispose of the e-mail.
>     >
>     >
>     >
>     >
>     > _______________________________________________
>     > Freesurfer mailing list
>     > Freesurfer@nmr.mgh.harvard.edu
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
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 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>
>     --
>     Douglas N. Greve, Ph.D.
>     MGH-NMR Center
> greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>
>     Phone Number: 617-724-2358 <tel:617-724-2358>
<tel:617-724-2358 <tel:617-724-2358>>
>     Fax: 617-726-7422 <tel:617-726-7422> <tel:617-726-7422
<tel:617-726-7422>>
>
>     Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>     Outgoing:
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>   
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>
>     _______________________________________________
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
Outgoing:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>

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Hi Doug

Any thoughts on this?

Trisanna

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

On Thu, Oct 6, 2016 at 10:37 PM, Trisanna Sprung-Much < trisanna.sprung-much@mail.mcgill.ca> wrote:

Hi Doug

So the pixel values are 0 and 1 *in the original .mnc*. It seems that after performing mri_vol2surf they become 0 and 255, and stay this way after mri_surf2surf as well. So, why would mri_vol2surf be changing the values?

Trisanna

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

On Thu, Oct 6, 2016 at 11:30 AM, Douglas Greve greve@nmr.mgh.harvard.edu wrote:

...

What are the pixel values in the mgz file? They should be binary, ie, 1=in a label, 0 = out of label

On 10/6/16 10:22 AM, Trisanna Sprung-Much wrote:

Overlays in .mgz format using mri_vol2surf

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

On Wed, Oct 5, 2016 at 5:56 PM, Douglas N Greve < greve@nmr.mgh.harvard.edu> wrote:

...

what is a labeled vertex? What file format? mgz? annot?

On 10/05/2016 05:03 PM, Trisanna Sprung-Much wrote:

...

the source files are labelled vertices from 20 subjects:

-T1s were labelled using an MNI software -Surfaces were created in FreeSurfer and surface overlays of the labels were created using mri_vol2surf -Surface overlays were registered to fsaverage using mri_surf2surf and then averaged to create a probability map, originally using

"mri_average"

...

So, essentially the overlays are binary files of my labels I believe

• I can send one over if you wish.

Trisanna

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

On Wed, Oct 5, 2016 at 4:52 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:

what are the source files ("all files"). What data type, value

range,

...

where did they come from?


On 10/05/2016 04:48 PM, Trisanna Sprung-Much wrote:
> Hi Doug
>
> So, of course now it works without --keep-filetype... :p it looks
> pretty much the same was when I use --keep-filetype.
>
> However, the values of Min and Max are still odd (out of 256) -

see

...

> snapshot
>
> Trisanna
>
>
>
>
>
> --
> Ph.D. Candidate
> McGill University
> Integrated Program in Neuroscience
> Psychology
>
>
> On Wed, Oct 5, 2016 at 4:23 PM, Douglas N Greve
> <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>> wrote:
>
>     Depending upon the type of the data, the --keep-datatype may
mess
>     things
>     up quite a bit. What happens if you don't include that? It
will not
>     create an annotation. maybe you mean some other file type?
>
>
>     On 10/05/2016 02:36 PM, Trisanna Sprung-Much wrote:
>     >
>     > Hi Doug
>     >
>     > I spoke with you at the Freesurfer tutorial last week
about using
>     > mri_average to average my sulcal labels and get a
probability map on
>     > fsaverage. You had suggested using "mri_concat" instead,
which is a
>     > newer command. So, I performed the following command:
>     >
>     > *mri_concat all files --o output.mgz --mean

--keep-datatype*

...

>     >
>     > I had to put --keep-datatype or else it tried to create an
annot
>     file.
>     >
>     > This worked just fine.
>     >
>     > My question then is concerning *the min and max values
*when this
>     > average is overlayed in Freeview. See the snapshot
attached. The
>     > values seem to be based on 256 instead of percentage and
this is
>     what
>     > happens when I used "mri_average" without specifying the
"-p". Is
>     > there a way to illustrate the values in percentage in a
similar way
>     > with mri_concat?
>     >
>     > Many thanks!
>     >
>     > Trisanna
>     >
>     >
>     > --
>     > Ph.D. Candidate
>     > McGill University
>     > Integrated Program in Neuroscience
>     > Psychology
>     >
>     >
>     >
>     > _______________________________________________
>     > Freesurfer mailing list
>     > Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     >
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<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurf

er

...

<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>
>     --
>     Douglas N. Greve, Ph.D.
>     MGH-NMR Center
> greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.

edu>>

...

>     Phone Number: 617-724-2358 <tel:617-724-2358>
<tel:617-724-2358 <tel:617-724-2358>>
>     Fax: 617-726-7422 <tel:617-726-7422> <tel:617-726-7422
<tel:617-726-7422>>
>
>     Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>     Outgoing:
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>     <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/

greve/

...

<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>
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 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>
>
>     The information in this e-mail is intended only for the
person to
>     whom it is
>     addressed. If you believe this e-mail was sent to you in
error and
>     the e-mail
>     contains patient information, please contact the Partners
>     Compliance HelpLine at
> http://www.partners.org/complianceline
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<http://www.partners.org/complianceline>> . If the e-mail was sent
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
Phone Number: 617-724-2358 <tel:617-724-2358>
Fax: 617-726-7422 <tel:617-726-7422>

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
Outgoing:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.har

vard.edu>

...

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<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>

---

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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

---

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The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

Hi Doug

*Here is what I ran:*

*trisanna@kaplan:~$ mri_vol2surf --mov /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc --o /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mgz --hemi lh --surf pial --regheader icbm-113* srcvol = /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc srcreg unspecified srcregold = 0 srcwarp unspecified surf = pial hemi = lh reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /data-01/trisanna/freesurfer/icbm-113/mri/orig.mgz as target reference. Reading surface /data-01/trisanna/freesurfer/icbm-113/surf/lh.pial Done reading source surface Mapping Source Volume onto Source Subject Surface 1 0 0 0 using old Done mapping volume to surface Number of source voxels hit = 53960 Writing to /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mgz Dim: 159741 1 1

When I open this in Freeview, the values are either 0 or 255 (see attached image). However, they were binary (0 or 1) in the label_aalf.mnc input file...

Trisanna

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

On Wed, Oct 12, 2016 at 2:09 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:

Hmmm, I don't know what could be going on. Can you send the command line and all terminal output?

On 10/06/2016 10:37 PM, Trisanna Sprung-Much wrote:

...

Hi Doug

So the pixel values are 0 and 1 *in the original .mnc*. It seems that after performing mri_vol2surf they become 0 and 255, and stay this way after mri_surf2surf as well. So, why would mri_vol2surf be changing the values?

Trisanna

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

On Thu, Oct 6, 2016 at 11:30 AM, Douglas Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:

What are the pixel values in the mgz file? They should be binary,
ie, 1=in a label, 0 = out of label


On 10/6/16 10:22 AM, Trisanna Sprung-Much wrote:

...

Overlays in .mgz format using mri_vol2surf

--
Ph.D. Candidate
McGill University
Integrated Program in Neuroscience
Psychology


On Wed, Oct 5, 2016 at 5:56 PM, Douglas N Greve
<greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>

wrote:

...

...

    what is a labeled vertex? What file format? mgz? annot?


    On 10/05/2016 05:03 PM, Trisanna Sprung-Much wrote:
    > the source files are labelled vertices from 20 subjects:
    >
    > -T1s were labelled using an MNI software
    > -Surfaces were created in FreeSurfer and surface overlays
    of the
    > labels were created using mri_vol2surf
    > -Surface overlays were registered to fsaverage using
    mri_surf2surf and
    > then averaged to create a probability map, originally using
    "mri_average"
    >
    > So, essentially the overlays are binary files of my labels
    I believe
    > - I can send one over if you wish.
    >
    > Trisanna
    >
    >
    > --
    > Ph.D. Candidate
    > McGill University
    > Integrated Program in Neuroscience
    > Psychology
    >
    >
    > On Wed, Oct 5, 2016 at 4:52 PM, Douglas N Greve
    > <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>> wrote:
    >
    >     what are the source files ("all files"). What data
    type, value range,
    >     where did they come from?
    >
    >
    >     On 10/05/2016 04:48 PM, Trisanna Sprung-Much wrote:
    >     > Hi Doug
    >     >
    >     > So, of course now it works without --keep-filetype...
    :p it looks
    >     > pretty much the same was when I use --keep-filetype.
    >     >
    >     > However, the values of Min and Max are still odd (out
    of 256) - see
    >     > snapshot
    >     >
    >     > Trisanna
    >     >
    >     >
    >     >
    >     >
    >     >
    >     > --
    >     > Ph.D. Candidate
    >     > McGill University
    >     > Integrated Program in Neuroscience
    >     > Psychology
    >     >
    >     >
    >     > On Wed, Oct 5, 2016 at 4:23 PM, Douglas N Greve
    >     > <greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
    >     >
    >     >     Depending upon the type of the data, the
    --keep-datatype may
    >     mess
    >     >     things
    >     >     up quite a bit. What happens if you don't include
    that? It
    >     will not
    >     >     create an annotation. maybe you mean some other
    file type?
    >     >
    >     >
    >     >     On 10/05/2016 02:36 PM, Trisanna Sprung-Much wrote:
    >     >     >
    >     >     > Hi Doug
    >     >     >
    >     >     > I spoke with you at the Freesurfer tutorial
    last week
    >     about using
    >     >     > mri_average to average my sulcal labels and get a
    >     probability map on
    >     >     > fsaverage. You had suggested using "mri_concat"
    instead,
    >     which is a
    >     >     > newer command. So, I performed the following
    command:
    >     >     >
    >     >     > *mri_concat all files --o output.mgz --mean
    --keep-datatype*
    >     >     >
    >     >     > I had to put --keep-datatype or else it tried
    to create an
    >     annot
    >     >     file.
    >     >     >
    >     >     > This worked just fine.
    >     >     >
    >     >     > My question then is concerning *the min and max
    values
    >     *when this
    >     >     > average is overlayed in Freeview. See the snapshot
    >     attached. The
    >     >     > values seem to be based on 256 instead of
    percentage and
    >     this is
    >     >     what
    >     >     > happens when I used "mri_average" without
    specifying the
    >     "-p". Is
    >     >     > there a way to illustrate the values in
    percentage in a
    >     similar way
    >     >     > with mri_concat?
    >     >     >
    >     >     > Many thanks!
    >     >     >
    >     >     > Trisanna
    >     >     >
    >     >     >
    >     >     > --
    >     >     > Ph.D. Candidate
    >     >     > McGill University
    >     >     > Integrated Program in Neuroscience
    >     >     > Psychology
    >     >     >
    >     >     >
    >     >     >
    >     >     > _______________________________________________
    >     >     > Freesurfer mailing list
    >     >     > Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >     >
    >
    https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

...

    >     >
    >     >     --
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greve/

...

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greve/

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Hi Trisanna

not sure about mri_concat, but mri_average -noconform -p ... should do the trick

cheers Bruce On Wed, 19 Oct 2016, Trisanna Sprung-Much wrote:

Something weird is happening with mri_vol2surf - even though the data looks great, the values are odd which carries over when I try to average with mri_concat. I would just like to get percentage values with mri_concat. thanks!

Trisanna

-- Ph.D. CandidateMcGill University Integrated Program in Neuroscience Psychology

On Mon, Oct 17, 2016 at 5:21 PM, Trisanna Sprung-Much trisanna.sprung-much@mail.mcgill.ca wrote: Hi Doug

Here is what I ran:

trisanna@kaplan:~$ mri_vol2surf --mov /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc --o /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mgz --hemi lh --surf pial --regheader icbm-113 srcvol = /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc srcreg unspecified srcregold = 0 srcwarp unspecified surf = pial hemi = lh reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header.   Using /data-01/trisanna/freesurfer/icbm-113/mri/orig.mgz as target reference. Reading surface /data-01/trisanna/freesurfer/icbm-113/surf/lh.pial Done reading source surface Mapping Source Volume onto Source Subject Surface  1 0 0 0 using old Done mapping volume to surface Number of source voxels hit = 53960 Writing to /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mgz Dim: 159741 1 1

When I open this in Freeview, the values are either 0 or 255 (see attached image). However, they were binary (0 or 1) in the label_aalf.mnc input file...

Trisanna

-- Ph.D. CandidateMcGill University Integrated Program in Neuroscience Psychology

On Wed, Oct 12, 2016 at 2:09 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote: Hmmm, I don't know what could be going on. Can you send the command line and all terminal output?

  On 10/06/2016 10:37 PM, Trisanna Sprung-Much wrote:
  > Hi Doug
  >
  > So the pixel values are 0 and 1 *in the original .mnc*. It seems that
  > after performing mri_vol2surf they become 0 and 255, and stay this way
  > after mri_surf2surf as well. So, why would mri_vol2surf be changing
  > the values?
  >
  > Trisanna
  >
  >
  >
  > --
  > Ph.D. Candidate
  > McGill University
  > Integrated Program in Neuroscience
  > Psychology
  >
  >
  > On Thu, Oct 6, 2016 at 11:30 AM, Douglas Greve
  > <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:
  >
  >     What are the pixel values in the mgz file? They should be binary,
  >     ie, 1=in a label, 0 = out of label
  >
  >
  >     On 10/6/16 10:22 AM, Trisanna Sprung-Much wrote:
  >>     Overlays in .mgz format using mri_vol2surf
  >>
  >>     --
  >>     Ph.D. Candidate
  >>     McGill University
  >>     Integrated Program in Neuroscience
  >>     Psychology
  >>
  >>
  >>     On Wed, Oct 5, 2016 at 5:56 PM, Douglas N Greve
  >>     <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:
  >>
  >>         what is a labeled vertex? What file format? mgz? annot?
  >>
  >>
  >>         On 10/05/2016 05:03 PM, Trisanna Sprung-Much wrote:
  >>         > the source files are labelled vertices from 20 subjects:
  >>         >
  >>         > -T1s were labelled using an MNI software
  >>         > -Surfaces were created in FreeSurfer and surface overlays
  >>         of the
  >>         > labels were created using mri_vol2surf
  >>         > -Surface overlays were registered to fsaverage using
  >>         mri_surf2surf and
  >>         > then averaged to create a probability map, originally using
  >>         "mri_average"
  >>         >
  >>         > So, essentially the overlays are binary files of my labels
  >>         I believe
  >>         > - I can send one over if you wish.
  >>         >
  >>         > Trisanna
  >>         >
  >>         >
  >>         > --
  >>         > Ph.D. Candidate
  >>         > McGill University
  >>         > Integrated Program in Neuroscience
  >>         > Psychology
  >>         >
  >>         >
  >>         > On Wed, Oct 5, 2016 at 4:52 PM, Douglas N Greve
  >>         > <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
  >>         <mailto:greve@nmr.mgh.harvard.edu
  >>         <mailto:greve@nmr.mgh.harvard.edu>>> wrote:
  >>         >
  >>         >     what are the source files ("all files"). What data
  >>         type, value range,
  >>         >     where did they come from?
  >>         >
  >>         >
  >>         >     On 10/05/2016 04:48 PM, Trisanna Sprung-Much wrote:
  >>         >     > Hi Doug
  >>         >     >
  >>         >     > So, of course now it works without --keep-filetype...
  >>         :p it looks
  >>         >     > pretty much the same was when I use --keep-filetype.
  >>         >     >
  >>         >     > However, the values of Min and Max are still odd (out
  >>         of 256) - see
  >>         >     > snapshot
  >>         >     >
  >>         >     > Trisanna
  >>         >     >
  >>         >     >
  >>         >     >
  >>         >     >
  >>         >     >
  >>         >     > --
  >>         >     > Ph.D. Candidate
  >>         >     > McGill University
  >>         >     > Integrated Program in Neuroscience
  >>         >     > Psychology
  >>         >     >
  >>         >     >
  >>         >     > On Wed, Oct 5, 2016 at 4:23 PM, Douglas N Greve
  >>         >     > <greve@nmr.mgh.harvard.edu
  >>         <mailto:greve@nmr.mgh.harvard.edu>
  >>         <mailto:greve@nmr.mgh.harvard.edu
  >>         <mailto:greve@nmr.mgh.harvard.edu>>
  >>         >     <mailto:greve@nmr.mgh.harvard.edu
  >>         <mailto:greve@nmr.mgh.harvard.edu>
  >>         >    <mailto:greve@nmr.mgh.harvard.edu
  >>         <mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
  >>         >     >
  >>         >     >     Depending upon the type of the data, the
  >>         --keep-datatype may
  >>         >     mess
  >>         >     >     things
  >>         >     >     up quite a bit. What happens if you don't include
  >>         that? It
  >>         >     will not
  >>         >     >     create an annotation. maybe you mean some other
  >>         file type?
  >>         >     >
  >>         >     >
  >>         >     >     On 10/05/2016 02:36 PM, Trisanna Sprung-Much wrote:
  >>         >     >     >
  >>         >     >     > Hi Doug
  >>         >     >     >
  >>         >     >     > I spoke with you at the Freesurfer tutorial
  >>         last week
  >>         >     about using
  >>         >     >     > mri_average to average my sulcal labels and get a
  >>         >     probability map on
  >>         >     >     > fsaverage. You had suggested using "mri_concat"
  >>         instead,
  >>         >     which is a
  >>         >     >     > newer command. So, I performed the following
  >>         command:
  >>         >     >     >
  >>         >     >     > *mri_concat all files --o output.mgz --mean
  >>         --keep-datatype*
  >>         >     >     >
  >>         >     >     > I had to put --keep-datatype or else it tried
  >>         to create an
  >>         >     annot
  >>         >     >     file.
  >>         >     >     >
  >>         >     >     > This worked just fine.
  >>         >     >     >
  >>         >     >     > My question then is concerning *the min and max
  >>         values
  >>         >     *when this
  >>         >     >     > average is overlayed in Freeview. See the snapshot
  >>         >     attached. The
  >>         >     >     > values seem to be based on 256 instead of
  >>         percentage and
  >>         >     this is
  >>         >     >     what
  >>         >     >     > happens when I used "mri_average" without
  >>         specifying the
  >>         >     "-p". Is
  >>         >     >     > there a way to illustrate the values in
  >>         percentage in a
  >>         >     similar way
  >>         >     >     > with mri_concat?
  >>         >     >     >
  >>         >     >     > Many thanks!
  >>         >     >     >
  >>         >     >     > Trisanna
  >>         >     >     >
  >>         >     >     >
  >>         >     >     > --
  >>         >     >     > Ph.D. Candidate
  >>         >     >     > McGill University
  >>         >     >     > Integrated Program in Neuroscience
  >>         >     >     > Psychology
  >>         >     >     >
  >>         >     >     >
  >>         >     >     >
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  >>         >     >     --
  >>         >     >     Douglas N. Greve, Ph.D.
  >>         >     >     MGH-NMR Center
  >>         >     > greve@nmr.mgh.harvard.edu
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  >>         <mailto:greve@nmr.mgh.harvard.edu>>>
  >>         >     >     Phone Number:617-724-2358 <tel:617-724-2358> <tel:617-724-2358
  >>         <tel:617-724-2358>>
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  >>         <tel:617-724-2358>>>
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...

...

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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

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Does anyone know who wrote the script for mri_concat? I would really like to get this figured out.

thanks

Trisanna

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

On Fri, Oct 21, 2016 at 12:13 PM, Trisanna Sprung-Much < trisanna.sprung-much@mail.mcgill.ca> wrote:

thanks Bruce - I had indeed used this months ago but at the workshop this semester Doug had suggested mri_concat as it is a newer command and also doesn't blur the data. I am just having problems creating percentage values with mri_concat.

*Would you know why mri_vol2surf is taking a binary minc file and creating values ranging from 0-255 that mri_concat then preserves?*

best Trisanna

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

On Fri, Oct 21, 2016 at 9:29 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:

...

Hi Trisanna

not sure about mri_concat, but mri_average -noconform -p ... should do the trick

cheers Bruce On Wed, 19 Oct 2016, Trisanna Sprung-Much wrote:

Something weird is happening with mri_vol2surf - even though the data

...

looks great, the values are odd which carries over when I try to average with mri_concat. I would just like to get percentage values with mri_concat. thanks!

Trisanna

-- Ph.D. CandidateMcGill University

Integrated Program in Neuroscience Psychology

On Mon, Oct 17, 2016 at 5:21 PM, Trisanna Sprung-Much < trisanna.sprung-much@mail.mcgill.ca> wrote: Hi Doug

Here is what I ran:

trisanna@kaplan:~$ mri_vol2surf --mov /data-01/trisanna/freesurfer/i cbm-113/label/label_aalf.mnc --o /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mgz --hemi lh --surf pial --regheader icbm-113 srcvol = /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc srcreg unspecified srcregold = 0 srcwarp unspecified surf = pial hemi = lh reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /data-01/trisanna/freesurfer/icbm-113/mri/orig.mgz as target reference. Reading surface /data-01/trisanna/freesurfer/icbm-113/surf/lh.pial Done reading source surface Mapping Source Volume onto Source Subject Surface 1 0 0 0 using old Done mapping volume to surface Number of source voxels hit = 53960 Writing to /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mgz Dim: 159741 1 1

When I open this in Freeview, the values are either 0 or 255 (see attached image). However, they were binary (0 or 1) in the label_aalf.mnc input file...

Trisanna

-- Ph.D. CandidateMcGill University

Integrated Program in Neuroscience Psychology

On Wed, Oct 12, 2016 at 2:09 PM, Douglas N Greve < greve@nmr.mgh.harvard.edu> wrote: Hmmm, I don't know what could be going on. Can you send the command line and all terminal output?

  On 10/06/2016 10:37 PM, Trisanna Sprung-Much wrote:
  > Hi Doug
  >
  > So the pixel values are 0 and 1 *in the original .mnc*. It seems

that > after performing mri_vol2surf they become 0 and 255, and stay this way > after mri_surf2surf as well. So, why would mri_vol2surf be changing > the values? > > Trisanna > > > > -- > Ph.D. Candidate > McGill University > Integrated Program in Neuroscience > Psychology > > > On Thu, Oct 6, 2016 at 11:30 AM, Douglas Greve > <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote: > > What are the pixel values in the mgz file? They should be binary, > ie, 1=in a label, 0 = out of label > > > On 10/6/16 10:22 AM, Trisanna Sprung-Much wrote: >> Overlays in .mgz format using mri_vol2surf >> >> -- >> Ph.D. Candidate >> McGill University >> Integrated Program in Neuroscience >> Psychology >> >> >> On Wed, Oct 5, 2016 at 5:56 PM, Douglas N Greve >> <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard. edu> wrote: >> >> what is a labeled vertex? What file format? mgz? annot? >> >> >> On 10/05/2016 05:03 PM, Trisanna Sprung-Much wrote: >> > the source files are labelled vertices from 20 subjects: >> > >> > -T1s were labelled using an MNI software >> > -Surfaces were created in FreeSurfer and surface overlays >> of the >> > labels were created using mri_vol2surf >> > -Surface overlays were registered to fsaverage using >> mri_surf2surf and >> > then averaged to create a probability map, originally using >> "mri_average" >> > >> > So, essentially the overlays are binary files of my labels >> I believe >> > - I can send one over if you wish. >> > >> > Trisanna >> > >> > >> > -- >> > Ph.D. Candidate >> > McGill University >> > Integrated Program in Neuroscience >> > Psychology >> > >> > >> > On Wed, Oct 5, 2016 at 4:52 PM, Douglas N Greve >> > <greve@nmr.mgh.harvard.edu mailto: greve@nmr.mgh.harvard.edu >> <mailto:greve@nmr.mgh.harvard.edu >> mailto:greve@nmr.mgh.harvard.edu>> wrote: >> > >> > what are the source files ("all files"). What data >> type, value range, >> > where did they come from? >> > >> > >> > On 10/05/2016 04:48 PM, Trisanna Sprung-Much wrote: >> > > Hi Doug >> > > >> > > So, of course now it works without --keep-filetype... >> :p it looks >> > > pretty much the same was when I use --keep-filetype. >> > > >> > > However, the values of Min and Max are still odd (out >> of 256) - see >> > > snapshot >> > > >> > > Trisanna >> > > >> > > >> > > >> > > >> > > >> > > -- >> > > Ph.D. Candidate >> > > McGill University >> > > Integrated Program in Neuroscience >> > > Psychology >> > > >> > > >> > > On Wed, Oct 5, 2016 at 4:23 PM, Douglas N Greve >> > > <greve@nmr.mgh.harvard.edu >> mailto:greve@nmr.mgh.harvard.edu >> <mailto:greve@nmr.mgh.harvard.edu >> mailto:greve@nmr.mgh.harvard.edu> >> > <mailto:greve@nmr.mgh.harvard.edu >> mailto:greve@nmr.mgh.harvard.edu >> > <mailto:greve@nmr.mgh.harvard.edu >> mailto:greve@nmr.mgh.harvard.edu>>> wrote: >> > > >> > > Depending upon the type of the data, the >> --keep-datatype may >> > mess >> > > things >> > > up quite a bit. What happens if you don't include >> that? It >> > will not >> > > create an annotation. maybe you mean some other >> file type? >> > > >> > > >> > > On 10/05/2016 02:36 PM, Trisanna Sprung-Much wrote: >> > > > >> > > > Hi Doug >> > > > >> > > > I spoke with you at the Freesurfer tutorial >> last week >> > about using >> > > > mri_average to average my sulcal labels and get a >> > probability map on >> > > > fsaverage. You had suggested using "mri_concat" >> instead, >> > which is a >> > > > newer command. So, I performed the following >> command: >> > > > >> > > > *mri_concat all files --o output.mgz --mean >> --keep-datatype* >> > > > >> > > > I had to put --keep-datatype or else it tried >> to create an >> > annot >> > > file. >> > > > >> > > > This worked just fine. >> > > > >> > > > My question then is concerning *the min and max >> values >> > *when this >> > > > average is overlayed in Freeview. See the snapshot >> > attached. The >> > > > values seem to be based on 256 instead of >> percentage and >> > this is >> > > what >> > > > happens when I used "mri_average" without >> specifying the >> > "-p". Is >> > > > there a way to illustrate the values in >> percentage in a >> > similar way >> > > > with mri_concat? >> > > > >> > > > Many thanks! >> > > > >> > > > Trisanna >> > > > >> > > > >> > > > -- >> > > > Ph.D. Candidate >> > > > McGill University >> > > > Integrated Program in Neuroscience >> > > > Psychology >> > > > >> > > > >> > > > >> > > > ______________________________ _________________ >> > > > Freesurfer mailing list >> > > > Freesurfer@nmr.mgh.harvard.edu >> mailto:Freesurfer@nmr.mgh.harvard.edu >> > <mailto:Freesurfer@nmr.mgh.harvard.edu >> mailto:Freesurfer@nmr.mgh.harvard.edu> >> > > <mailto:Freesurfer@nmr.mgh.harvard.edu >> mailto:Freesurfer@nmr.mgh.harvard.edu >> > <mailto:Freesurfer@nmr.mgh.harvard.edu >> mailto:Freesurfer@nmr.mgh.harvard.edu>> >> > > > >> > >> https://mail.nmr.mgh.harvard. edu/mailman/listinfo/freesurfer >> https://mail.nmr.mgh.harvard .edu/mailman/listinfo/freesurfer >> > >> <https://mail.nmr.mgh.harvard. edu/mailman/listinfo/freesurfer >> https://mail.nmr.mgh.harvard .edu/mailman/listinfo/freesurfer> >> > > >> <https://mail.nmr.mgh.harvard. edu/mailman/listinfo/freesurfer >> https://mail.nmr.mgh.harvard .edu/mailman/listinfo/freesurfer >> > >> <https://mail.nmr.mgh.harvard. edu/mailman/listinfo/freesurfer >> https://mail.nmr.mgh.harvard .edu/mailman/listinfo/freesurfer>> >> > > >> > > -- >> > > Douglas N. Greve, Ph.D. >> > > MGH-NMR Center >> > > greve@nmr.mgh.harvard.edu >> mailto:greve@nmr.mgh.harvard.edu >> <mailto:greve@nmr.mgh.harvard.edu >> mailto:greve@nmr.mgh.harvard.edu> >> > <mailto:greve@nmr.mgh.harvard.edu >> mailto:greve@nmr.mgh.harvard.edu >> <mailto:greve@nmr.mgh.harvard.edu >> mailto:greve@nmr.mgh.harvard.edu>> >> > > Phone Number:617-724-2358 tel:617-724-2358 <tel:617-724-2358 >> tel:617-724-2358> >> > <tel:617-724-2358 tel:617-724-2358 <tel: 617-724-2358 >> tel:617-724-2358>> >> > > Fax: 617-726-7422 tel:617-726-7422

...

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Hi Doug

I have uploaded the label_aalf.mnc and testsurfaceoverlay.mgz

Here is an example of the mri_vol2surf that I use

*trisanna@kaplan:~$ mri_vol2surf --mov /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc --o /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mgz --hemi lh *--surf pial --regheader icbm-113 srcvol = /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc srcreg unspecified srcregold = 0 srcwarp unspecified surf = pial hemi = lh reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /data-01/trisanna/freesurfer/icbm-113/mri/orig.mgz as target reference. Reading surface /data-01/trisanna/freesurfer/icbm-113/surf/lh.pial Done reading source surface Mapping Source Volume onto Source Subject Surface 1 0 0 0 using old Done mapping volume to surface Number of source voxels hit = 53960 Writing to /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mgz Dim: 159741 1 1

*When I open this in Freeview, the values are either 0 or 255. However, they were binary (0 or 1) in the label_aalf.mnc input file.*

The mri_concat command that I ran on label_aalf for 20 hemispheres is:

*trisanna@kaplan:~$ mri_concat /data-01/trisanna/freesurfer/fsaverage/committee_meeting/DISPLAY_overlays_fsaverage_left/aalf_lh/*.mgz --o /data-01/trisanna/freesurfer/fsaverage/committee_meeting/DISPLAY_overlays_fsaverage_left/aalf_lh/mri_concat_test.mgz --mean* ninputs = 20 Checking inputs nframestot = 20 Allocing output Done allocing nframes = 20 Computing mean across frames Writing to /data-01/trisanna/freesurfer/fsaverage/committee_meeting/ DISPLAY_overlays_fsaverage_left/aalf_lh/mri_concat_test.mgz

thanks

Trisanna

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

On Tue, Nov 1, 2016 at 2:45 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:

Can you send me the mri_concat command and also upload the input files to our filedrop?

https://gate.nmr.mgh.harvard.edu/filedrop2

On 11/01/2016 02:31 PM, Trisanna Sprung-Much wrote:

...

Does anyone know who wrote the script for mri_concat? I would really like to get this figured out.

thanks

Trisanna

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

On Fri, Oct 21, 2016 at 12:13 PM, Trisanna Sprung-Much <trisanna.sprung-much@mail.mcgill.ca mailto:trisanna.sprung-much@mail.mcgill.ca> wrote:

thanks Bruce - I had indeed used this months ago but at the
workshop this semester Doug had suggested mri_concat as it is a
newer command and also doesn't blur the data. I am just having
problems creating percentage values with mri_concat.

*Would you know why mri_vol2surf is taking a binary minc file and
creating values ranging from 0-255 that mri_concat then preserves?*

best
Trisanna

--
Ph.D. Candidate
McGill University
Integrated Program in Neuroscience
Psychology


On Fri, Oct 21, 2016 at 9:29 AM, Bruce Fischl
<fischl@nmr.mgh.harvard.edu <mailto:fischl@nmr.mgh.harvard.edu>>
wrote:

    Hi Trisanna

    not sure about mri_concat, but mri_average -noconform -p ...
    should do the trick

    cheers
    Bruce
    On Wed, 19 Oct 2016, Trisanna Sprung-Much wrote:

        Something weird is happening with mri_vol2surf - even
        though the data looks great, the values are odd
        which carries over when I try to average with mri_concat.
        I would just like to get percentage values
        with mri_concat.
        thanks!

        Trisanna

        --
        Ph.D. CandidateMcGill University

        Integrated Program in Neuroscience
        Psychology


        On Mon, Oct 17, 2016 at 5:21 PM, Trisanna Sprung-Much
        <trisanna.sprung-much@mail.mcgill.ca
        <mailto:trisanna.sprung-much@mail.mcgill.ca>> wrote:
              Hi Doug

        Here is what I ran:

        trisanna@kaplan:~$ mri_vol2surf --mov
        /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc
        --o
        /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mgz
        --hemi lh --surf pial --regheader
        icbm-113
        srcvol =
        /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc
        srcreg unspecified
        srcregold = 0
        srcwarp unspecified
        surf = pial
        hemi = lh
        reshape = 0
        interp = nearest
        float2int = round
        GetProjMax = 0
        INFO: float2int code = 0
        INFO: changing type to float
        Done loading volume
        Computing registration from header.
          Using /data-01/trisanna/freesurfer/icbm-113/mri/orig.mgz
        as target reference.
        Reading surface
        /data-01/trisanna/freesurfer/icbm-113/surf/lh.pial
        Done reading source surface
        Mapping Source Volume onto Source Subject Surface
         1 0 0 0
        using old
        Done mapping volume to surface
        Number of source voxels hit = 53960
        Writing to
        /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mgz
        Dim: 159741 1 1

        When I open this in Freeview, the values are either 0 or
        255 (see attached image). However, they
        were binary (0 or 1) in the label_aalf.mnc input file...

        Trisanna


        --
        Ph.D. CandidateMcGill University

        Integrated Program in Neuroscience
        Psychology


        On Wed, Oct 12, 2016 at 2:09 PM, Douglas N Greve
        <greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>> wrote:
              Hmmm, I don't know what could be going on. Can you
        send the command line
              and all terminal output?


              On 10/06/2016 10:37 PM, Trisanna Sprung-Much wrote:
              > Hi Doug
              >
              > So the pixel values are 0 and 1 *in the original
        .mnc*. It seems that
              > after performing mri_vol2surf they become 0 and
        255, and stay this way
              > after mri_surf2surf as well. So, why would
        mri_vol2surf be changing
              > the values?
              >
              > Trisanna
              >
              >
              >
              > --
              > Ph.D. Candidate
              > McGill University
              > Integrated Program in Neuroscience
              > Psychology
              >
              >
              > On Thu, Oct 6, 2016 at 11:30 AM, Douglas Greve
              > <greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
        <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>> wrote:
              >
              >     What are the pixel values in the mgz file?
        They should be binary,
              >     ie, 1=in a label, 0 = out of label
              >
              >
              >     On 10/6/16 10:22 AM, Trisanna Sprung-Much wrote:
              >>     Overlays in .mgz format using mri_vol2surf
              >>
              >>     --
              >>     Ph.D. Candidate
              >>     McGill University
              >>     Integrated Program in Neuroscience
              >>     Psychology
              >>
              >>
              >>     On Wed, Oct 5, 2016 at 5:56 PM, Douglas N Greve
              >>     <greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
        <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>> wrote:
              >>
              >>         what is a labeled vertex? What file
        format? mgz? annot?
              >>
              >>
              >>         On 10/05/2016 05:03 PM, Trisanna
        Sprung-Much wrote:
              >>         > the source files are labelled vertices
        from 20 subjects:
              >>         >
              >>         > -T1s were labelled using an MNI software
              >>         > -Surfaces were created in FreeSurfer
        and surface overlays
              >>         of the
              >>         > labels were created using mri_vol2surf
              >>         > -Surface overlays were registered to
        fsaverage using
              >>         mri_surf2surf and
              >>         > then averaged to create a probability
        map, originally using
              >>         "mri_average"
              >>         >
              >>         > So, essentially the overlays are binary
        files of my labels
              >>         I believe
              >>         > - I can send one over if you wish.
              >>         >
              >>         > Trisanna
              >>         >
              >>         >
              >>         > --
              >>         > Ph.D. Candidate
              >>         > McGill University
              >>         > Integrated Program in Neuroscience
              >>         > Psychology
              >>         >
              >>         >
              >>         > On Wed, Oct 5, 2016 at 4:52 PM, Douglas
        N Greve
              >>         > <greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
        <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
              >>         <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
              >>         <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
              >>         >
              >>         >     what are the source files ("all
        files"). What data
              >>         type, value range,
              >>         >     where did they come from?
              >>         >
              >>         >
              >>         >     On 10/05/2016 04:48 PM, Trisanna
        Sprung-Much wrote:
              >>         >     > Hi Doug
              >>         >     >
              >>         >     > So, of course now it works
        without --keep-filetype...
              >>         :p it looks
              >>         >     > pretty much the same was when I
        use --keep-filetype.
              >>         >     >
              >>         >     > However, the values of Min and
        Max are still odd (out
              >>         of 256) - see
              >>         >     > snapshot
              >>         >     >
              >>         >     > Trisanna
              >>         >     >
              >>         >     >
              >>         >     >
              >>         >     >
              >>         >     >
              >>         >     > --
              >>         >     > Ph.D. Candidate
              >>         >     > McGill University
              >>         >     > Integrated Program in Neuroscience
              >>         >     > Psychology
              >>         >     >
              >>         >     >
              >>         >     > On Wed, Oct 5, 2016 at 4:23 PM,
        Douglas N Greve
              >>         >     > <greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
              >>         <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
              >>         <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
              >>         <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>
              >>         >     <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
              >>         <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
              >>         >    <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
              >>         <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>>> wrote:
              >>         >     >
              >>         >     >  Depending upon the type of the
        data, the
              >>         --keep-datatype may
              >>         >     mess
              >>         >     >  things
              >>         >     >     up quite a bit. What happens
        if you don't include
              >>         that? It
              >>         >     will not
              >>         >     >  create an annotation. maybe you
        mean some other
              >>         file type?
              >>         >     >
              >>         >     >
              >>         >     >     On 10/05/2016 02:36 PM,
        Trisanna Sprung-Much wrote:
              >>         >     >  >
              >>         >     >  > Hi Doug
              >>         >     >  >
              >>         >     >  > I spoke with you at the
        Freesurfer tutorial
              >>         last week
              >>         >     about using
              >>         >     >  > mri_average to average my
        sulcal labels and get a
              >>         >     probability map on
              >>         >     >  > fsaverage. You had suggested
        using "mri_concat"
              >>         instead,
              >>         >     which is a
              >>         >     >  > newer command. So, I performed
        the following
              >>         command:
              >>         >     >  >
              >>         >     >  > *mri_concat all files --o
        output.mgz --mean
              >>         --keep-datatype*
              >>         >     >  >
              >>         >     >  > I had to put --keep-datatype
        or else it tried
              >>         to create an
              >>         >     annot
              >>         >     >  file.
              >>         >     >  >
              >>         >     >  > This worked just fine.
              >>         >     >  >
              >>         >     >  > My question then is concerning
        *the min and max
              >>         values
              >>         >     *when this
              >>         >     >  > average is overlayed in
        Freeview. See the snapshot
              >>         >     attached. The
              >>         >     >  > values seem to be based on 256
        instead of
              >>         percentage and
              >>         >     this is
              >>         >     >  what
              >>         >     >  > happens when I used
        "mri_average" without
              >>         specifying the
              >>         >     "-p". Is
              >>         >     >  > there a way to illustrate the
        values in
              >>         percentage in a
              >>         >     similar way
              >>         >     >  > with mri_concat?
              >>         >     >  >
              >>         >     >  > Many thanks!
              >>         >     >  >
              >>         >     >  > Trisanna
              >>         >     >  >
              >>         >     >  >
              >>         >     >  > --
              >>         >     >  > Ph.D. Candidate
              >>         >     >  > McGill University
              >>         >     >  > Integrated Program in

Neuroscience

...

              >>         >     >  > Psychology
              >>         >     >  >
              >>         >     >  >
              >>         >     >  >
              >>         >     >  >
        _______________________________________________
              >>         >     >  > Freesurfer mailing list
              >>         >     >  > Freesurfer@nmr.mgh.harvard.edu
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              >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
              >>         >
         <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
              >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
              >>         >     >
         <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
              >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
              >>         >
         <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
              >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
              >>         >     >  >
              >>         >
              >>
        https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>

...

              >>
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edu/mailman/listinfo/freesurfer

...

        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>>

...

              >>         >
              >>
        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer

...

        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>

...

              >>
         <https://mail.nmr.mgh.harvard.

edu/mailman/listinfo/freesurfer

...

        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>>>

...

              >>         >     >
              >>
        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer

...

        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>

...

              >>
         <https://mail.nmr.mgh.harvard.

edu/mailman/listinfo/freesurfer

...

        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>>

...

              >>         >
              >>
        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer

...

        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>

...

              >>
         <https://mail.nmr.mgh.harvard.

edu/mailman/listinfo/freesurfer

...

        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>>>>

...

              >>         >     >
              >>         >     >     --
              >>         >     >  Douglas N. Greve, Ph.D.
              >>         >     >  MGH-NMR Center
              >>         >     > greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
              >>         <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
              >>         <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
              >>         <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>
              >>         >     <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
              >>         <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
              >>         <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
              >>         <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>>
              >>         >     >  Phone Number:617-724-2358
        <tel:617-724-2358> <tel:617-724-2358 <tel:617-724-2358>>
        <tel:617-724-2358 <tel:617-724-2358>
              >>         <tel:617-724-2358 <tel:617-724-2358>>>
              >>         >     <tel:617-724-2358
        <tel:617-724-2358> <tel:617-724-2358 <tel:617-724-2358>>
        <tel:617-724-2358 <tel:617-724-2358>
              >>         <tel:617-724-2358 <tel:617-724-2358>>>>
              >>         >     >  Fax: 617-726-7422
        <tel:617-726-7422> <tel:617-726-7422 <tel:617-726-7422>>
        >>         <tel:617-726-7422 <tel:617-726-7422>
        <tel:617-726-7422 <tel:617-726-7422>>> <tel:617-726-7422
        <tel:617-726-7422>
        >>         <tel:617-726-7422 <tel:617-726-7422>>
        >>         >     <tel:617-726-7422 <tel:617-726-7422>
        <tel:617-726-7422 <tel:617-726-7422>>>>
        >>         >     >
        >>         >     >     Bugs:
        >> surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
        >>
         <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
        >>         >
         <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
        >>
         <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
        >>         >     >
        >>
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
        >>
         <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
        >>         >
         <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
        >>
         <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>>
        >>         >     >     FileDrop:
        >> https://gate.nmr.mgh.harvard.edu/filedrop2
        <https://gate.nmr.mgh.harvard.edu/filedrop2>
        >>         <https://gate.nmr.mgh.harvard.edu/filedrop2
        <https://gate.nmr.mgh.harvard.edu/filedrop2>>
        >>         >
         <https://gate.nmr.mgh.harvard.edu/filedrop2
        <https://gate.nmr.mgh.harvard.edu/filedrop2>
        >>         <https://gate.nmr.mgh.harvard.edu/filedrop2
        <https://gate.nmr.mgh.harvard.edu/filedrop2>>>
        >>         >     >
         <https://gate.nmr.mgh.harvard.edu/filedrop2
        <https://gate.nmr.mgh.harvard.edu/filedrop2>
        >>         <https://gate.nmr.mgh.harvard.edu/filedrop2
        <https://gate.nmr.mgh.harvard.edu/filedrop2>>
        >>         >
         <https://gate.nmr.mgh.harvard.edu/filedrop2
        <https://gate.nmr.mgh.harvard.edu/filedrop2>
        >>         <https://gate.nmr.mgh.harvard.edu/filedrop2
        <https://gate.nmr.mgh.harvard.edu/filedrop2>>>>
        >>         >     >
        www.nmr.mgh.harvard.edu/facility/filedrop/index.html
        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html

        >>
         <http://www.nmr.mgh.harvard.ed

u/facility/filedrop/index.html

...

        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html

...

        >>         >
        >>
        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html

        >>
         <http://www.nmr.mgh.harvard.ed

u/facility/filedrop/index.html

...

        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html

...

...

        >>         >     >
        >>
        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html

        >>
         <http://www.nmr.mgh.harvard.ed

u/facility/filedrop/index.html

...

        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html

...

        >>         >
         <http://www.nmr.mgh.harvard.ed

u/facility/filedrop/index.html

...

        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html

        >>
         <http://www.nmr.mgh.harvard.ed

u/facility/filedrop/index.html

...

        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html

...

...

...

        >>         >     >     Outgoing:
        >>         >     >
        >>
        ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/gre

ve/

...

        <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/

flat/greve/>

...

        >>
         <ftp://surfer.nmr.mgh.harvard.

edu/transfer/outgoing/flat/greve/

...

        <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/

flat/greve/>>

...

        >>         >
        >>
        <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/

flat/greve/

...

        <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/

flat/greve/>

...

        >>
         <ftp://surfer.nmr.mgh.harvard.

edu/transfer/outgoing/flat/greve/

...

        <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/

flat/greve/>>>

...

        >>         >     >
        >>
        <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/

flat/greve/

...

        <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/

flat/greve/>

...

        >>
         <ftp://surfer.nmr.mgh.harvard.

edu/transfer/outgoing/flat/greve/

...

        <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/

flat/greve/>>

...

        >>         >
        >>
        <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/

flat/greve/

...

        <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/

flat/greve/>

...

        >>
         <ftp://surfer.nmr.mgh.harvard.

edu/transfer/outgoing/flat/greve/

...

        <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/

flat/greve/>>>>

...

        >>         >     >
        >>         >     >
        _______________________________________________
        >>         >     >  Freesurfer mailing list
        >>         >     > Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
        >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
        >>         >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
        >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
        >>         >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
        >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
        >>         > <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
        >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
        >>         >     >
        >>
        https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>

...

        >>
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edu/mailman/listinfo/freesurfer

...

        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>>

...

        >>         >
        >>
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reesurfer

...

        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>

...

        >>
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edu/mailman/listinfo/freesurfer

...

        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>>>

...

        >>         >     >
        >>         >
        >>
         <https://mail.nmr.mgh.harvard.

edu/mailman/listinfo/freesurfer

...

        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>

...

        >>
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edu/mailman/listinfo/freesurfer

...

        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>>

...

        >>         >
        >>
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reesurfer

...

        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>

...

        >>
         <https://mail.nmr.mgh.harvard.

edu/mailman/listinfo/freesurfer

...

        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>>>>

...

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        >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
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reesurfer>

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edu/mailman/listinfo/freesurfer

...

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reesurfer>>

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        >>         >
        >>
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reesurfer

...

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reesurfer>

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        >>
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edu/mailman/listinfo/freesurfer

...

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reesurfer>>>

...

        >>         >
        >>         >     --
        >>         >     Douglas N. Greve, Ph.D.
        >>         >     MGH-NMR Center
        >>         > greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
        >>         <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
        >>         <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
        >>         <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>
        >>         >     Phone Number: 617-724-2358
        <tel:617-724-2358> <tel:617-724-2358 <tel:617-724-2358>>
        >>         <tel:617-724-2358 <tel:617-724-2358>
        <tel:617-724-2358 <tel:617-724-2358>>>
        >>         >     Fax: 617-726-7422 <tel:617-726-7422>
        <tel:617-726-7422 <tel:617-726-7422>> <tel:617-726-7422
        <tel:617-726-7422>
        >>         <tel:617-726-7422 <tel:617-726-7422>>>
        >>         >
        >>         >     Bugs:
        surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
        >>
         <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
        >>         >
         <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
        >>
         <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
        >>         >     FileDrop:
        https://gate.nmr.mgh.harvard.edu/filedrop2
        <https://gate.nmr.mgh.harvard.edu/filedrop2>
        >>         <https://gate.nmr.mgh.harvard.edu/filedrop2
        <https://gate.nmr.mgh.harvard.edu/filedrop2>>
        >>         >
         <https://gate.nmr.mgh.harvard.edu/filedrop2
        <https://gate.nmr.mgh.harvard.edu/filedrop2>
        >>         <https://gate.nmr.mgh.harvard.edu/filedrop2
        <https://gate.nmr.mgh.harvard.edu/filedrop2>>>
        >>         >
        www.nmr.mgh.harvard.edu/facility/filedrop/index.html
        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html

        >>
         <http://www.nmr.mgh.harvard.ed

u/facility/filedrop/index.html

...

        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html

...

        >>         >
        >>
        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html

        >>
         <http://www.nmr.mgh.harvard.ed

u/facility/filedrop/index.html

...

        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html

...

...

        >>         >     Outgoing:
        >>         >
        >>
        ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/gre

ve/

...

        <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/

flat/greve/>

...

        >>
         <ftp://surfer.nmr.mgh.harvard.

edu/transfer/outgoing/flat/greve/

...

        <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/

flat/greve/>>

...

        >>         >
        >>
        <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/

flat/greve/

...

        <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/

flat/greve/>

...

        >>
         <ftp://surfer.nmr.mgh.harvard.

edu/transfer/outgoing/flat/greve/

...

        <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/

flat/greve/>>>

...

        >>         >
        >>         >  ______________________________

---

...

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        >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
        >>         >
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reesurfer>

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edu/mailman/listinfo/freesurfer

...

        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>>

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        >>         >
        >>
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reesurfer

...

        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>

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        >>
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edu/mailman/listinfo/freesurfer

...

        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>>>

...

        >>         >
        >>         >
        >>         >
        >>         >
        >>         > _______________________________________________
        >>         > Freesurfer mailing list
        >>         > Freesurfer@nmr.mgh.harvard.edu
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        >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
        >>         >
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reesurfer>

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        >>
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edu/mailman/listinfo/freesurfer

...

        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>>

...

        >>
        >>         --
        >>         Douglas N. Greve, Ph.D.
        >>         MGH-NMR Center
        >> greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
        <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
        >>         Phone Number: 617-724-2358 <tel:617-724-2358>
        <tel:617-724-2358 <tel:617-724-2358>>
        >>         Fax: 617-726-7422 <tel:617-726-7422>
        <tel:617-726-7422 <tel:617-726-7422>>
        >>
        >>         Bugs:
        surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
        >>
         <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
        >>         FileDrop:
        https://gate.nmr.mgh.harvard.edu/filedrop2
        <https://gate.nmr.mgh.harvard.edu/filedrop2>
        >>         <https://gate.nmr.mgh.harvard.edu/filedrop2
        <https://gate.nmr.mgh.harvard.edu/filedrop2>>
        >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html

        >>
         <http://www.nmr.mgh.harvard.ed

u/facility/filedrop/index.html

...

        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html

...

        >>         Outgoing:
        >>
        ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/gre

ve/

...

        <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/

flat/greve/>

...

        >>
         <ftp://surfer.nmr.mgh.harvard.

edu/transfer/outgoing/flat/greve/

...

        <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/

flat/greve/>>

...

        >>
        >>  _______________________________________________
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        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
        >>
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        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>

...

        >>
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edu/mailman/listinfo/freesurfer

...

        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>>

...

        >>
        >>
        >>
        >>
        >>     _______________________________________________
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        >> Freesurfer@nmr.mgh.harvard.edu
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reesurfer>

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        >>
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edu/mailman/listinfo/freesurfer

...

        <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

reesurfer>>

...

        >     _______________________________________________
        Freesurfer mailing
        >     list Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
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...

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reesurfer>>

...

        The
        >     information in this e-mail is intended only for the
        person to whom
        >     it is addressed. If you believe this e-mail was sent
        to you in
        >     error and the e-mail contains patient information,
        please contact
        >     the Partners Compliance HelpLine at
        > http://www.partners.org/complianceline
        <http://www.partners.org/complianceline>
        >     <http://www.partners.org/complianceline
        <http://www.partners.org/complianceline>> . If the e-mail
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...

        --
        Douglas N. Greve, Ph.D.
        MGH-NMR Center
        greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
        Phone Number: 617-724-2358 <tel:617-724-2358>
        Fax: 617-726-7422 <tel:617-726-7422>

        Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
        FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
        <https://gate.nmr.mgh.harvard.edu/filedrop2>
        www.nmr.mgh.harvard.edu/facility/filedrop/index.html
        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html

        Outgoing:
        ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/gre

ve/

...

        <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/

flat/greve/>

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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

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Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Hi Doug

I am confused. The values of the input .mnc for mri_vol2surf are 0 and 1.* I attach a snapshot using an inhouse software where you can see the "1" highlighted in blue.* We also used the following command to ensure they are 0 and 1:

minclookup ' label_folder '/labels_final_minc1.mnc ' label_folder '/label_aalf.mnc -discrete -lut_string "4 1" -clobber --> this extracts my id 4 that I painted this sulcus with and gives it a value of 1.

Do you mean you do not see the binary values on your end?

Trisanna

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

On Mon, Nov 7, 2016 at 3:53 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:

It looks like the input has values of 255 and 0, not 1 and 0. How do you verify that the values are 0 and 1?

On 11/07/2016 03:43 PM, Trisanna Sprung-Much wrote:

...

Hi Doug

I have uploaded the label_aalf.mnc and testsurfaceoverlay.mgz

Here is an example of the mri_vol2surf that I use

trisanna@kaplan:~$ mri_vol2surf --mov /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc --o /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mgz --hemi lh *--surf pial --regheader icbm-113 srcvol = /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc srcreg unspecified srcregold = 0 srcwarp unspecified surf = pial hemi = lh reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /data-01/trisanna/freesurfer/icbm-113/mri/orig.mgz as target reference. Reading surface /data-01/trisanna/freesurfer/icbm-113/surf/lh.pial Done reading source surface Mapping Source Volume onto Source Subject Surface 1 0 0 0 using old Done mapping volume to surface Number of source voxels hit = 53960 Writing to /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mgz Dim: 159741 1 1

When I open this in Freeview, the values are either 0 or 255. However, they were binary (0 or 1) in the label_aalf.mnc input file.*

The mri_concat command that I ran on label_aalf for 20 hemispheres is:

*trisanna@kaplan:~$ mri_concat /data-01/trisanna/freesurfer/fsaverage/committee_meeting/DIS

PLAY_overlays_fsaverage_left/aalf_lh/*.mgz

...

--o /data-01/trisanna/freesurfer/fsaverage/committee_meeting/DIS

PLAY_overlays_fsaverage_left/aalf_lh/mri_concat_test.mgz

...

--mean* ninputs = 20 Checking inputs nframestot = 20 Allocing output Done allocing nframes = 20 Computing mean across frames Writing to /data-01/trisanna/freesurfer/fsaverage/committee_meeting/DIS

PLAY_overlays_fsaverage_left/aalf_lh/mri_concat_test.mgz

...

thanks

Trisanna

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

On Tue, Nov 1, 2016 at 2:45 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:

Can you send me the mri_concat command and also upload the input

files

...

to our filedrop?

https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>

On 11/01/2016 02:31 PM, Trisanna Sprung-Much wrote:
> Does anyone know who wrote the script for mri_concat? I would

really

...

> like to get this figured out.
>
> thanks
>
> Trisanna
>
> --
> Ph.D. Candidate
> McGill University
> Integrated Program in Neuroscience
> Psychology
>
>
> On Fri, Oct 21, 2016 at 12:13 PM, Trisanna Sprung-Much
> <trisanna.sprung-much@mail.mcgill.ca
<mailto:trisanna.sprung-much@mail.mcgill.ca>
> <mailto:trisanna.sprung-much@mail.mcgill.ca
<mailto:trisanna.sprung-much@mail.mcgill.ca>>> wrote:
>
>     thanks Bruce - I had indeed used this months ago but at the
>     workshop this semester Doug had suggested mri_concat as it is a
>     newer command and also doesn't blur the data. I am just having
>     problems creating percentage values with mri_concat.
>
>     *Would you know why mri_vol2surf is taking a binary minc
file and
>     creating values ranging from 0-255 that mri_concat then
preserves?*
>
>     best
>     Trisanna
>
>     --
>     Ph.D. Candidate
>     McGill University
>     Integrated Program in Neuroscience
>     Psychology
>
>
>     On Fri, Oct 21, 2016 at 9:29 AM, Bruce Fischl
>     <fischl@nmr.mgh.harvard.edu
<mailto:fischl@nmr.mgh.harvard.edu>
<mailto:fischl@nmr.mgh.harvard.edu
<mailto:fischl@nmr.mgh.harvard.edu>>>
>     wrote:
>
>         Hi Trisanna
>
>         not sure about mri_concat, but mri_average -noconform -p

...

...

>         should do the trick
>
>         cheers
>         Bruce
>         On Wed, 19 Oct 2016, Trisanna Sprung-Much wrote:
>
>             Something weird is happening with mri_vol2surf - even
>             though the data looks great, the values are odd
>             which carries over when I try to average with
mri_concat.
>             I would just like to get percentage values
>             with mri_concat.
>             thanks!
>
>             Trisanna
>
>             --
>             Ph.D. CandidateMcGill University
>
>             Integrated Program in Neuroscience
>             Psychology
>
>
>             On Mon, Oct 17, 2016 at 5:21 PM, Trisanna Sprung-Much
>             <trisanna.sprung-much@mail.mcgill.ca
<mailto:trisanna.sprung-much@mail.mcgill.ca>
>  <mailto:trisanna.sprung-much@mail.mcgill.ca
<mailto:trisanna.sprung-much@mail.mcgill.ca>>> wrote:
>                   Hi Doug
>
>             Here is what I ran:
>
>             trisanna@kaplan:~$ mri_vol2surf --mov
>
 /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc
>             --o
>
 /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mg
<http://testsurfaceoverlay.mg>z
>             --hemi lh --surf pial --regheader
>             icbm-113
>             srcvol =
>
 /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc
>             srcreg unspecified
>             srcregold = 0
>             srcwarp unspecified
>             surf = pial
>             hemi = lh
>             reshape = 0
>             interp = nearest
>             float2int = round
>             GetProjMax = 0
>             INFO: float2int code = 0
>             INFO: changing type to float
>             Done loading volume
>             Computing registration from header.
>               Using
/data-01/trisanna/freesurfer/icbm-113/mri/orig.mgz
>             as target reference.
>             Reading surface
>             /data-01/trisanna/freesurfer/icbm-113/surf/lh.pial
>             Done reading source surface
>             Mapping Source Volume onto Source Subject Surface
>              1 0 0 0
>             using old
>             Done mapping volume to surface
>             Number of source voxels hit = 53960
>             Writing to
>
 /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mg
<http://testsurfaceoverlay.mg>z
>             Dim: 159741 1 1
>
>             When I open this in Freeview, the values are either 0

or

...

>             255 (see attached image). However, they
>             were binary (0 or 1) in the label_aalf.mnc input

file...

...

>
>             Trisanna
>
>
>             --
>             Ph.D. CandidateMcGill University
>
>             Integrated Program in Neuroscience
>             Psychology
>
>
>             On Wed, Oct 12, 2016 at 2:09 PM, Douglas N Greve
>             <greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu <mailto:

greve@nmr.mgh.harvard.edu>>> wrote:

...

>                   Hmmm, I don't know what could be going on. Can

you

...

>             send the command line
>                   and all terminal output?
>
>
>                   On 10/06/2016 10:37 PM, Trisanna Sprung-Much
wrote:
>                   > Hi Doug
>                   >
>                   > So the pixel values are 0 and 1 *in the

original

...

>             .mnc*. It seems that
>                   > after performing mri_vol2surf they become 0 and
>             255, and stay this way
>                   > after mri_surf2surf as well. So, why would
>             mri_vol2surf be changing
>                   > the values?
>                   >
>                   > Trisanna
>                   >
>                   >
>                   >
>                   > --
>                   > Ph.D. Candidate
>                   > McGill University
>                   > Integrated Program in Neuroscience
>                   > Psychology
>                   >
>                   >
>                   > On Thu, Oct 6, 2016 at 11:30 AM, Douglas Greve
>                   > <greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>             <mailto:greve@nmr.mgh.harvard.edu <mailto:

greve@nmr.mgh.harvard.edu>

...

>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
>                   >
>                   >     What are the pixel values in the mgz file?
>             They should be binary,
>                   >     ie, 1=in a label, 0 = out of label
>                   >
>                   >
>                   >     On 10/6/16 10:22 AM, Trisanna
Sprung-Much wrote:
>                   >>     Overlays in .mgz format using mri_vol2surf
>                   >>
>                   >>     --
>                   >>     Ph.D. Candidate
>                   >>     McGill University
>                   >>     Integrated Program in Neuroscience
>                   >>     Psychology
>                   >>
>                   >>
>                   >>     On Wed, Oct 5, 2016 at 5:56 PM, Douglas
N Greve
>                   >>     <greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>  <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
>                   >>
>                   >>         what is a labeled vertex? What file
>             format? mgz? annot?
>                   >>
>                   >>
>                   >>         On 10/05/2016 05:03 PM, Trisanna
>             Sprung-Much wrote:
>                   >>         > the source files are labelled
vertices
>             from 20 subjects:
>                   >>         >
>                   >>         > -T1s were labelled using an MNI
software
>                   >>         > -Surfaces were created in FreeSurfer
>             and surface overlays
>                   >>         of the
>                   >>         > labels were created using
mri_vol2surf
>                   >>         > -Surface overlays were registered to
>             fsaverage using
>                   >>         mri_surf2surf and
>                   >>         > then averaged to create a

probability

...

>             map, originally using
>                   >>         "mri_average"
>                   >>         >
>                   >>         > So, essentially the overlays are
binary
>             files of my labels
>                   >>         I believe
>                   >>         > - I can send one over if you wish.
>                   >>         >
>                   >>         > Trisanna
>                   >>         >
>                   >>         >
>                   >>         > --
>                   >>         > Ph.D. Candidate
>                   >>         > McGill University
>                   >>         > Integrated Program in Neuroscience
>                   >>         > Psychology
>                   >>         >
>                   >>         >
>                   >>         > On Wed, Oct 5, 2016 at 4:52 PM,
Douglas
>             N Greve
>                   >>         > <greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>      >>         <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>                   >>         <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>> wrote:
>                   >>         >
>                   >>         >     what are the source files ("all
>             files"). What data
>                   >>         type, value range,
>                   >>         >     where did they come from?
>                   >>         >
>                   >>         >
>                   >>         >     On 10/05/2016 04:48 PM, Trisanna
>             Sprung-Much wrote:
>                   >>         >     > Hi Doug
>                   >>         >     >
>                   >>         >     > So, of course now it works
>             without --keep-filetype...
>                   >>         :p it looks
>                   >>         >     > pretty much the same was when

I

...

>             use --keep-filetype.
>                   >>         >     >
>                   >>         >     > However, the values of Min and
>             Max are still odd (out
>                   >>         of 256) - see
>                   >>         >     > snapshot
>                   >>         >     >
>                   >>         >     > Trisanna
>                   >>         >     >
>                   >>         >     >
>                   >>         >     >
>                   >>         >     >
>                   >>         >     >
>                   >>         >     > --
>                   >>         >     > Ph.D. Candidate
>                   >>         >     > McGill University
>                   >>         >     > Integrated Program in
Neuroscience
>                   >>         >     > Psychology
>                   >>         >     >
>                   >>         >     >
>                   >>         >     > On Wed, Oct 5, 2016 at 4:23

PM,

...

>             Douglas N Greve
>                   >>         >     > <greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>                   >>         <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>                   >>         <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>                   >>         <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>
>                   >>         >
 <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu

>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>                   >>         <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>                   >>         > <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>                   >>         <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>>> wrote:
>                   >>         >     >
>                   >>         >     > Depending upon the type of the
>             data, the
>                   >>  --keep-datatype may
>                   >>         >     mess
>                   >>         >     > things
>                   >>         >     >    up quite a bit. What

happens

...

>             if you don't include
>                   >>         that? It
>                   >>         >     will not
>                   >>         >     > create an annotation. maybe

you

...

>             mean some other
>                   >>         file type?
>                   >>         >     >
>                   >>         >     >
>                   >>         >     >    On 10/05/2016 02:36 PM,
>             Trisanna Sprung-Much wrote:
>                   >>         >     > >
>                   >>         >     > > Hi Doug
>                   >>         >     > >
>                   >>         >     > > I spoke with you at the
>             Freesurfer tutorial
>                   >>         last week
>                   >>         >     about using
>                   >>         >     > > mri_average to average my
>             sulcal labels and get a
>                   >>         >  probability map on
>                   >>         >     > > fsaverage. You had suggested
>             using "mri_concat"
>                   >>         instead,
>                   >>         >     which is a
>                   >>         >     > > newer command. So, I
performed
>             the following
>                   >>         command:
>                   >>         >     > >
>                   >>         >     > > *mri_concat all files --o
>             output.mgz --mean
>                   >>  --keep-datatype*
>                   >>         >     > >
>                   >>         >     > > I had to put --keep-datatype
>             or else it tried
>                   >>         to create an
>                   >>         >     annot
>                   >>         >     > file.
>                   >>         >     > >
>                   >>         >     > > This worked just fine.
>                   >>         >     > >
>                   >>         >     > > My question then is
concerning
>             *the min and max
>                   >>         values
>                   >>         >     *when this
>                   >>         >     > > average is overlayed in
>             Freeview. See the snapshot
>                   >>         >  attached. The
>                   >>         >     > > values seem to be based
on 256
>             instead of
>                   >>         percentage and
>                   >>         >     this is
>                   >>         >     > what
>                   >>         >     > > happens when I used
>             "mri_average" without
>                   >>         specifying the
>                   >>         >     "-p". Is
>                   >>         >     > > there a way to illustrate

the

...

>             values in
>                   >>         percentage in a
>                   >>         >  similar way
>                   >>         >     > > with mri_concat?
>                   >>         >     > >
>                   >>         >     > > Many thanks!
>                   >>         >     > >
>                   >>         >     > > Trisanna
>                   >>         >     > >
>                   >>         >     > >
>                   >>         >     > > --
>                   >>         >     > > Ph.D. Candidate
>                   >>         >     > > McGill University
>                   >>         >     > > Integrated Program in
Neuroscience
>                   >>         >     > > Psychology
>                   >>         >     > >
>                   >>         >     > >
>                   >>         >     > >
>                   >>         >     > >
>             _______________________________________________
>                   >>         >     > > Freesurfer mailing list
>                   >>         >     > >
Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.har

vard.edu>

...

>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>                   >>
 <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>                   >>         >
>              <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>                   >>
 <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
>                   >>         >     >
>              <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>                   >>
 <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>                   >>         >
>              <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>                   >>
 <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>
>                   >>         >     > >
>                   >>         >
>                   >>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>                   >>
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>                   >>         >
>                   >>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>                   >>
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
>                   >>         >     >
>                   >>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>                   >>
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>                   >>         >
>                   >>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>                   >>
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>>
>                   >>         >     >
>                   >>         >     >    --
>                   >>         >     > Douglas N. Greve, Ph.D.
>                   >>         >     > MGH-NMR Center
>                   >>         >     > greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>                   >>         <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>                   >>         <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>                   >>         <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>
>                   >>         >
 <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu

>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>                   >>         <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>                   >>         <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>                   >>         <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>>
>                   >>         >     > Phone Number:617-724-2358
<tel:617-724-2358>
>             <tel:617-724-2358 <tel:617-724-2358>>
<tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358
<tel:617-724-2358>>>
>             <tel:617-724-2358 <tel:617-724-2358>
<tel:617-724-2358 <tel:617-724-2358>>
>                   >>         <tel:617-724-2358
<tel:617-724-2358> <tel:617-724-2358 <tel:617-724-2358>>>>
>                   >>         >  <tel:617-724-2358 <tel:

617-724-2358>

...

>             <tel:617-724-2358 <tel:617-724-2358>>
<tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358
<tel:617-724-2358>>>
>             <tel:617-724-2358 <tel:617-724-2358>
<tel:617-724-2358 <tel:617-724-2358>>
>                   >>         <tel:617-724-2358
<tel:617-724-2358> <tel:617-724-2358 <tel:617-724-2358>>>>>
>                   >>         > >  Fax: 617-726-7422

tel:617-726-7422

...

>             <tel:617-726-7422 <tel:617-726-7422>>
<tel:617-726-7422 <tel:617-726-7422> <tel:617-726-7422
<tel:617-726-7422>>>
>             >>         <tel:617-726-7422 <tel:617-726-7422>
<tel:617-726-7422 <tel:617-726-7422>>
>             <tel:617-726-7422 <tel:617-726-7422>
<tel:617-726-7422 <tel:617-726-7422>>>> <tel:617-726-7422
>  <tel:617-726-7422 <tel:617-726-7422>>
>             >>         <tel:617-726-7422 <tel:617-726-7422>
<tel:617-726-7422>>
>             >>         >     <tel:617-726-7422
<tel:617-726-7422> <tel:617-726-7422>
>             <tel:617-726-7422 <tel:617-726-7422>
<tel:617-726-7422>>>>
>             >>         >     >
>             >>         >     >  Bugs:
>             >> surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>
 <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>             >>
>
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>
 <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
>             >>         >
>
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>
 <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>             >>
>
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>
 <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>>
>             >>         >     >
>             >>
>
 <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>
 <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>             >>
>
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>
 <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
>             >>         >
>
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>
 <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>             >>
>
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>
 <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>>>
>             >>         >     >  FileDrop:
>             >> https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>             >>
 <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>
>             >>         >
>              <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>             >>
 <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>>
>             >>         >     >
>              <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>             >>
 <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>
>             >>         >
>              <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>             >>
 <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>>>
>             >>         >     >
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>
 <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>             >>
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>
 <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>
>             >>         >
>             >>
>
 <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>
 <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>             >>
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>
 <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>>
>             >>         >     >
>             >>
>
 <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>
 <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>             >>
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>
 <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>
>             >>         >
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>
 <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>             >>
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>
 <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>>>
>             >>         >     >  Outgoing:
>             >>         >     >
>             >>
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>             >>
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>
>             >>         >
>             >>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>             >>
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>>
>             >>         >     >
>             >>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>             >>
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>
>             >>         >
>             >>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>             >>
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>>>
>             >>         >     >
>             >>         >     >
>             _______________________________________________
>             >>         >     > Freesurfer mailing list
>             >>         >     > Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>             >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>             >>         >
 <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>             >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
>             >>       >     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>             >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>             >>         > <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>             >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>
>             >>         >     >
>             >>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>             >>
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>             >>         >
>             >>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>             >>
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
>             >>         >     >
>             >>         >
>             >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>             >>
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>             >>         >
>             >>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>             >>
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>>
>             >>         >     >
>             >>         >     >
>             >>         >     >  The information in this e-mail is
>             intended only
>             >>         for the
>             >>         >     person to
>             >>         >     >  whom it is
>             >>         >     > addressed. If you believe this

e-mail

...

>             was sent to
>             >>         you in
>             >>         >     error and
>             >>         >     >  the e-mail
>             >>         >     >  contains patient information,
>             please contact the
>             >>         Partners
>             >>         >     > Compliance HelpLine at
>             >>         >     >
http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>             <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>
>             >>         <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>             <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>>
>             >>         >
 <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>             <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>
>             >>         <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>             <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>>>
>             >>         >     >
>              <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>             <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>
>             >>         <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>             <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>>
>             >>         >
 <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>             <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>
>             >>         <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>             <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>>>> . If the e-mail
>             >>         was sent
>             >>         >     >     to you in error
>             >>         >     >  but does not contain patient
>             information, please
>             >>         contact the
>             >>         >     >  sender and properly
>             >>         >     >  dispose of the e-mail.
>             >>         >     >
>             >>         >     >
>             >>         >     >
>             >>         >     >
>             >>         >     >
>             _______________________________________________
>             >>         >     > Freesurfer mailing list
>             >>         >     > Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>             >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>             >>         >
 <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>             >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
>             >>         >     >
>             >>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>             >>
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>             >>         >
>             >>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>             >>
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
>             >>         >
>             >>         >     --
>             >>         >     Douglas N. Greve, Ph.D.
>             >>         >     MGH-NMR Center
>             >>         > greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>             >>         <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>             >>         <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>             >>         <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>
>             >>         >     Phone Number: 617-724-2358
<tel:617-724-2358>
>             <tel:617-724-2358 <tel:617-724-2358>>
<tel:617-724-2358 <tel:617-724-2358>>
>             >>         <tel:617-724-2358 <tel:617-724-2358>
<tel:617-724-2358>
>             <tel:617-724-2358 <tel:617-724-2358>
<tel:617-724-2358>>>
>             >>         >     Fax: 617-726-7422
<tel:617-726-7422> <tel:617-726-7422>
>             <tel:617-726-7422 <tel:617-726-7422>
<tel:617-726-7422>> <tel:617-726-7422
>             <tel:617-726-7422 <tel:617-726-7422>>
>             >>         <tel:617-726-7422 <tel:617-726-7422>
<tel:617-726-7422>>>
>             >>         >
>             >>         >     Bugs:
> surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>
 <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>             >>
>
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>
 <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
>             >>         >
>
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>
 <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>             >>
>
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>
 <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>>
>             >>         >     FileDrop:
> https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>             >>
 <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>
>             >>         >
>              <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>             >>
 <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>>
>             >>         >
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>
 <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>             >>
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>
 <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>
>             >>         >
>             >>
>
 <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>
 <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>             >>
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>
 <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>>
>             >>         >     Outgoing:
>             >>         >
>             >>
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>             >>
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>
>             >>         >
>             >>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>             >>
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>>
>             >>         >
>             >>         >
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<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>             >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>             >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>             >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
>             >>         >
>             >>
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>             >>         >
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>
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<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
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<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>             >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>             >>         >
>             >>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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>             >>
>             >>         --
>             >>         Douglas N. Greve, Ph.D.
>             >>         MGH-NMR Center
>             >> greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>             >>         Phone Number: 617-724-2358
<tel:617-724-2358> <tel:617-724-2358>
>             <tel:617-724-2358 <tel:617-724-2358>

tel:617-724-2358>

...

>             >>         Fax: 617-726-7422 <tel:617-726-7422>
<tel:617-726-7422>
>             <tel:617-726-7422 <tel:617-726-7422>

tel:617-726-7422>

...

>             >>
>             >>         Bugs:
> surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>
 <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>             >>
>
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>
 <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
>             >>         FileDrop:
> https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>             >>
 <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>
>             >>
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>
 <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>             >>
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>
 <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>
>             >>         Outgoing:
>             >>
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>             >>
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>
>             >>
>             >> _______________________________________________
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>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>             >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>             >>
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<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>             >>
>             >>
>             >>
>             >>
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>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>             >>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>             >>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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>
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<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>             >>
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>             >  _______________________________________________
>             Freesurfer mailing
>             >     list Freesurfer@nmr.mgh.harvard.edu
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>             > <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>             >
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>
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>             >
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>
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>             The
>             >     information in this e-mail is intended only
for the
>             person to whom
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>             >     error and the e-mail contains patient

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>             please contact
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<http://www.partners.org/complianceline>>
>             >     <http://www.partners.org/complianceline
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>             <http://www.partners.org/complianceline
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<mailto:Freesurfer@nmr.mgh.harvard.edu>>
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<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>             --
>             Douglas N. Greve, Ph.D.
>             MGH-NMR Center
> greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu

...

>             Phone Number: 617-724-2358 <tel:617-724-2358>
<tel:617-724-2358>
>             Fax: 617-726-7422 <tel:617-726-7422>

tel:617-726-7422

...

>
>             Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>
 <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>             FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>
 <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>             Outgoing:
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>             _______________________________________________
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>             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
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>
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<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>
>
>
>
>
>         _______________________________________________
>         Freesurfer mailing list
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<mailto:Freesurfer@nmr.mgh.harvard.edu>
>         <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
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<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>
>
>         The information in this e-mail is intended only for the
person
>         to whom it is
>         addressed. If you believe this e-mail was sent to you in
error
>         and the e-mail
>         contains patient information, please contact the Partners
>         Compliance HelpLine at
> http://www.partners.org/complianceline
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>         <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>> . If the e-mail was
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the

...

>         sender and properly
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
Phone Number: 617-724-2358 <tel:617-724-2358>
Fax: 617-726-7422 <tel:617-726-7422>

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
Outgoing:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>

_______________________________________________
Freesurfer mailing list
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---

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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

---

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Hi Doug

Well, now that is very odd... yes, when I use my minc viewer (see previous email image attached) I see 0 and 1...

So, something is happening in the conversion of the .mnc

best Trisanna

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

On Mon, Nov 7, 2016 at 4:38 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:

I did not see binary values. The values were 255 in the mnc volume. The caveat here is that I can only read it in using FS, so if there is something burried in the FS code that causes the values to change from 1 to 255, I might not see it. Is there a minc viewer you can use to resolve this?

On 11/07/2016 04:23 PM, Trisanna Sprung-Much wrote:

...

Hi Doug

I am confused. The values of the input .mnc for mri_vol2surf are 0 and 1.*I attach a snapshot using an inhouse software where you can see the "1" highlighted in blue.* We also used the following command to ensure they are 0 and 1:

minclookup ' label_folder '/labels_final_minc1.mnc ' label_folder '/label_aalf.mnc -discrete -lut_string "4 1" -clobber --> this extracts my id 4 that I painted this sulcus with and gives it a value of 1.

Do you mean you do not see the binary values on your end?

Trisanna

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

On Mon, Nov 7, 2016 at 3:53 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:

It looks like the input has values of 255 and 0, not 1 and 0. How
do you
verify that the values are 0 and 1?


On 11/07/2016 03:43 PM, Trisanna Sprung-Much wrote:
> Hi Doug
>
> I have uploaded the label_aalf.mnc and testsurfaceoverlay.mgz
>
> Here is an example of the mri_vol2surf that I use
>
> *
> trisanna@kaplan:~$ mri_vol2surf --mov
> /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc --o
> /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mgz
--hemi lh
> *--surf pial --regheader icbm-113
> srcvol = /data-01/trisanna/freesurfer/

icbm-113/label/label_aalf.mnc

...

> srcreg unspecified
> srcregold = 0
> srcwarp unspecified
> surf = pial
> hemi = lh
> reshape = 0
> interp = nearest
> float2int = round
> GetProjMax = 0
> INFO: float2int code = 0
> INFO: changing type to float
> Done loading volume
> Computing registration from header.
>   Using /data-01/trisanna/freesurfer/icbm-113/mri/orig.mgz as

target

...

> reference.
> Reading surface /data-01/trisanna/freesurfer/icbm-113/surf/lh.pial
> Done reading source surface
> Mapping Source Volume onto Source Subject Surface
>  1 0 0 0
> using old
> Done mapping volume to surface
> Number of source voxels hit = 53960
> Writing to
/data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mgz
> Dim: 159741 1 1
> *
> When I open this in Freeview, the values are either 0 or 255.

However,

...

> they were binary (0 or 1) in the label_aalf.mnc input file.*
>
>
> The mri_concat command that I ran on label_aalf for 20
hemispheres is:
>
> *trisanna@kaplan:~$ mri_concat
>
/data-01/trisanna/freesurfer/fsaverage/committee_meeting/

DISPLAY_overlays_fsaverage_left/aalf_lh/*.mgz

...

> --o
>
/data-01/trisanna/freesurfer/fsaverage/committee_meeting/

DISPLAY_overlays_fsaverage_left/aalf_lh/mri_concat_test.mgz

...

> --mean*
> ninputs = 20
> Checking inputs
> nframestot = 20
> Allocing output
> Done allocing
> nframes = 20
> Computing mean across frames
> Writing to
>
/data-01/trisanna/freesurfer/fsaverage/committee_meeting/

DISPLAY_overlays_fsaverage_left/aalf_lh/mri_concat_test.mgz

...

>
>
> thanks
>
> Trisanna
>
> --
> Ph.D. Candidate
> McGill University
> Integrated Program in Neuroscience
> Psychology
>
>
> On Tue, Nov 1, 2016 at 2:45 PM, Douglas N Greve
> <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>> wrote:
>
>     Can you send me the mri_concat command and also upload the
input files
>     to our filedrop?
>
> https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>
>     On 11/01/2016 02:31 PM, Trisanna Sprung-Much wrote:
>     > Does anyone know who wrote the script for mri_concat? I
would really
>     > like to get this figured out.
>     >
>     > thanks
>     >
>     > Trisanna
>     >
>     > --
>     > Ph.D. Candidate
>     > McGill University
>     > Integrated Program in Neuroscience
>     > Psychology
>     >
>     >
>     > On Fri, Oct 21, 2016 at 12:13 PM, Trisanna Sprung-Much
>     > <trisanna.sprung-much@mail.mcgill.ca
<mailto:trisanna.sprung-much@mail.mcgill.ca>
>     <mailto:trisanna.sprung-much@mail.mcgill.ca
<mailto:trisanna.sprung-much@mail.mcgill.ca>>
>     > <mailto:trisanna.sprung-much@mail.mcgill.ca
<mailto:trisanna.sprung-much@mail.mcgill.ca>
>     <mailto:trisanna.sprung-much@mail.mcgill.ca
<mailto:trisanna.sprung-much@mail.mcgill.ca>>>> wrote:
>     >
>     >     thanks Bruce - I had indeed used this months ago but
at the
>     >     workshop this semester Doug had suggested mri_concat
as it is a
>     >     newer command and also doesn't blur the data. I am
just having
>     >     problems creating percentage values with mri_concat.
>     >
>     >     *Would you know why mri_vol2surf is taking a binary minc
>     file and
>     >     creating values ranging from 0-255 that mri_concat then
>     preserves?*
>     >
>     >     best
>     >     Trisanna
>     >
>     >     --
>     >     Ph.D. Candidate
>     >     McGill University
>     >     Integrated Program in Neuroscience
>     >     Psychology
>     >
>     >
>     >     On Fri, Oct 21, 2016 at 9:29 AM, Bruce Fischl
>     >     <fischl@nmr.mgh.harvard.edu
<mailto:fischl@nmr.mgh.harvard.edu>
>     <mailto:fischl@nmr.mgh.harvard.edu
<mailto:fischl@nmr.mgh.harvard.edu>>
>     <mailto:fischl@nmr.mgh.harvard.edu
<mailto:fischl@nmr.mgh.harvard.edu>
>     <mailto:fischl@nmr.mgh.harvard.edu <mailto:fischl@nmr.mgh.

harvard.edu>>>>

...

>     >     wrote:
>     >
>     >         Hi Trisanna
>     >
>     >         not sure about mri_concat, but mri_average
-noconform -p ...
>     >         should do the trick
>     >
>     >         cheers
>     >         Bruce
>     >         On Wed, 19 Oct 2016, Trisanna Sprung-Much wrote:
>     >
>     >             Something weird is happening with mri_vol2surf
- even
>     >             though the data looks great, the values are odd
>     >             which carries over when I try to average with
>     mri_concat.
>     >             I would just like to get percentage values
>     >             with mri_concat.
>     >             thanks!
>     >
>     >             Trisanna
>     >
>     >             --
>     >             Ph.D. CandidateMcGill University
>     >
>     >             Integrated Program in Neuroscience
>     >             Psychology
>     >
>     >
>     >             On Mon, Oct 17, 2016 at 5:21 PM, Trisanna
Sprung-Much
>     >             <trisanna.sprung-much@mail.mcgill.ca
<mailto:trisanna.sprung-much@mail.mcgill.ca>
>     <mailto:trisanna.sprung-much@mail.mcgill.ca
<mailto:trisanna.sprung-much@mail.mcgill.ca>>
>     >  <mailto:trisanna.sprung-much@mail.mcgill.ca
<mailto:trisanna.sprung-much@mail.mcgill.ca>
>     <mailto:trisanna.sprung-much@mail.mcgill.ca
<mailto:trisanna.sprung-much@mail.mcgill.ca>>>> wrote:
>     >                   Hi Doug
>     >
>     >             Here is what I ran:
>     >
>     >             trisanna@kaplan:~$ mri_vol2surf --mov
>     >
>      /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc
>     >             --o
>     >
>      /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mg
<http://testsurfaceoverlay.mg>
>     <http://testsurfaceoverlay.mg>z
>     >        --hemi lh --surf pial --regheader
>     >             icbm-113
>     >             srcvol =
>     >
>      /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc
>     >             srcreg unspecified
>     >             srcregold = 0
>     >             srcwarp unspecified
>     >             surf = pial
>     >             hemi = lh
>     >             reshape = 0
>     >             interp = nearest
>     >             float2int = round
>     >             GetProjMax = 0
>     >             INFO: float2int code = 0
>     >             INFO: changing type to float
>     >             Done loading volume
>     >             Computing registration from header.
>     >               Using
>     /data-01/trisanna/freesurfer/icbm-113/mri/orig.mgz
>     >             as target reference.
>     >             Reading surface
>     >  /data-01/trisanna/freesurfer/icbm-113/surf/lh.pial
>     >             Done reading source surface
>     >             Mapping Source Volume onto Source Subject Surface
>     >              1 0 0 0
>     >             using old
>     >             Done mapping volume to surface
>     >             Number of source voxels hit = 53960
>     >             Writing to
>     >
>      /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mg
<http://testsurfaceoverlay.mg>
>     <http://testsurfaceoverlay.mg>z
>     >             Dim: 159741 1 1
>     >
>     >             When I open this in Freeview, the values are
either 0 or
>     >             255 (see attached image). However, they
>     >             were binary (0 or 1) in the label_aalf.mnc
input file...
>     >
>     >             Trisanna
>     >
>     >
>     >             --
>     >             Ph.D. CandidateMcGill University
>     >
>     >             Integrated Program in Neuroscience
>     >             Psychology
>     >
>     >
>     >             On Wed, Oct 12, 2016 at 2:09 PM, Douglas N Greve
>     >             <greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >        <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
>     >                   Hmmm, I don't know what could be going
on. Can you
>     >             send the command line
>     >                   and all terminal output?
>     >
>     >
>     >                   On 10/06/2016 10:37 PM, Trisanna

Sprung-Much

...

>     wrote:
>     >                   > Hi Doug
>     >                   >
>     >                   > So the pixel values are 0 and 1 *in
the original
>     >             .mnc*. It seems that
>     >                   > after performing mri_vol2surf they
become 0 and
>     >             255, and stay this way
>     >                   > after mri_surf2surf as well. So, why

would

...

>     >             mri_vol2surf be changing
>     >                   > the values?
>     >                   >
>     >                   > Trisanna
>     >                   >
>     >                   >
>     >                   >
>     >                   > --
>     >                   > Ph.D. Candidate
>     >                   > McGill University
>     >                   > Integrated Program in Neuroscience
>     >                   > Psychology
>     >                   >
>     >                   >
>     >                   > On Thu, Oct 6, 2016 at 11:30 AM,
Douglas Greve
>     >                   > <greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>     >             <mailto:greve@nmr.mgh.harvard.edu <mailto:

greve@nmr.mgh.harvard.edu>

...

<mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu

...

>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>> wrote:
>     >                   >
>     >                   >     What are the pixel values in the mgz

file?

...

>     >             They should be binary,
>     >                   >     ie, 1=in a label, 0 = out of label
>     >                   >
>     >                   >
>     >                   >     On 10/6/16 10:22 AM, Trisanna
>     Sprung-Much wrote:
>     >                   >>     Overlays in .mgz format using
mri_vol2surf
>     >                   >>
>     >                   >>     --
>     >                   >>     Ph.D. Candidate
>     >                   >>     McGill University
>     >                   >>     Integrated Program in Neuroscience
>     >                   >>     Psychology
>     >                   >>
>     >                   >>
>     >                   >>     On Wed, Oct 5, 2016 at 5:56 PM,
Douglas
>     N Greve
>     >                   >>     <greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>     > <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>> wrote:
>     >                   >>
>     >                   >>         what is a labeled vertex?
What file
>     >             format? mgz? annot?
>     >                   >>
>     >                   >>
>     >                   >>         On 10/05/2016 05:03 PM, Trisanna
>     >             Sprung-Much wrote:
>     >                   >>         > the source files are labelled
>     vertices
>     >             from 20 subjects:
>     >                   >>         >
>     >                   >>         > -T1s were labelled using an

MNI

...

>     software
>     >                   >>         > -Surfaces were created in
FreeSurfer
>     >             and surface overlays
>     >                   >>         of the
>     >                   >>         > labels were created using
>     mri_vol2surf
>     >                   >>         > -Surface overlays were
registered to
>     >             fsaverage using
>     >                   >>  mri_surf2surf and
>     >                   >>         > then averaged to create a
probability
>     >             map, originally using
>     >                   >>  "mri_average"
>     >                   >>         >
>     >                   >>         > So, essentially the
overlays are
>     binary
>     >             files of my labels
>     >                   >>         I believe
>     >                   >>         > - I can send one over if
you wish.
>     >                   >>         >
>     >                   >>         > Trisanna
>     >                   >>         >
>     >                   >>         >
>     >                   >>         > --
>     >                   >>         > Ph.D. Candidate
>     >                   >>         > McGill University
>     >                   >>         > Integrated Program in
Neuroscience
>     >                   >>         > Psychology
>     >                   >>         >
>     >                   >>         >
>     >                   >>         > On Wed, Oct 5, 2016 at 4:52

PM,

...

>     Douglas
>     >             N Greve
>     >                   >>         > <greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>
>     > >>         <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>     >                   >>  <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>>> wrote:
>     >                   >>         >
>     >                   >>         >    what are the source
files ("all
>     >             files"). What data
>     >                   >>         type, value range,
>     >                   >>         >    where did they come from?
>     >                   >>         >
>     >                   >>         >
>     >                   >>         >    On 10/05/2016 04:48 PM,
Trisanna
>     >             Sprung-Much wrote:
>     >                   >>         >    > Hi Doug
>     >                   >>         >    >
>     >                   >>         >    > So, of course now it

works

...

>     >             without --keep-filetype...
>     >                   >>         :p it looks
>     >                   >>         >    > pretty much the same
was when I
>     >             use --keep-filetype.
>     >                   >>         >    >
>     >                   >>         >    > However, the values of
Min and
>     >             Max are still odd (out
>     >                   >>         of 256) - see
>     >                   >>         >    > snapshot
>     >                   >>         >    >
>     >                   >>         >    > Trisanna
>     >                   >>         >    >
>     >                   >>         >    >
>     >                   >>         >    >
>     >                   >>         >    >
>     >                   >>         >    >
>     >                   >>         >    > --
>     >                   >>         >    > Ph.D. Candidate
>     >                   >>         >    > McGill University
>     >                   >>         >    > Integrated Program in
>     Neuroscience
>     >                   >>         >    > Psychology
>     >                   >>         >    >
>     >                   >>         >    >
>     >                   >>         >    > On Wed, Oct 5, 2016 at
4:23 PM,
>     >             Douglas N Greve
>     >                   >>         >    >
<greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>     >                   >>  <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>
>     >                   >>  <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>     >                   >>  <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>>
>     >                   >>         >
>      <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu

...

>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>     >                   >>  <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>
>     >                   >>         >
<mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>     >                   >>  <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>>>> wrote:
>     >                   >>         >    >
>     >                   >>         >    > Depending upon the
type of the
>     >             data, the
>     >                   >> --keep-datatype may
>     >                   >>         >    mess
>     >                   >>         >    > things
>     >                   >>         >    >    up quite a bit.
What happens
>     >             if you don't include
>     >                   >>         that? It
>     >                   >>         >    will not
>     >                   >>         >    > create an annotation.
maybe you
>     >             mean some other
>     >                   >>         file type?
>     >                   >>         >    >
>     >                   >>         >    >
>     >                   >>         >    >    On 10/05/2016 02:36

PM,

...

>     >             Trisanna Sprung-Much wrote:
>     >                   >>         >    > >
>     >                   >>         >    > > Hi Doug
>     >                   >>         >    > >
>     >                   >>         >    > > I spoke with you at the
>     >             Freesurfer tutorial
>     >                   >>         last week
>     >                   >>         >    about using
>     >                   >>         >    > > mri_average to
average my
>     >             sulcal labels and get a
>     >                   >>         > probability map on
>     >                   >>         >    > > fsaverage. You had
suggested
>     >             using "mri_concat"
>     >                   >>  instead,
>     >                   >>         >    which is a
>     >                   >>         >    > > newer command. So, I
>     performed
>     >             the following
>     >                   >>  command:
>     >                   >>         >    > >
>     >                   >>         >    > > *mri_concat all
files --o
>     >             output.mgz --mean
>     >                   >> --keep-datatype*
>     >                   >>         >    > >
>     >                   >>         >    > > I had to put
--keep-datatype
>     >             or else it tried
>     >                   >>         to create an
>     >                   >>         >    annot
>     >                   >>         >    > file.
>     >                   >>         >    > >
>     >                   >>         >    > > This worked just fine.
>     >                   >>         >    > >
>     >                   >>         >    > > My question then is
>     concerning
>     >             *the min and max
>     >                   >>  values
>     >                   >>         >    *when this
>     >                   >>         >    > > average is overlayed in
>     >             Freeview. See the snapshot
>     >                   >>         > attached. The
>     >                   >>         >    > > values seem to be based
>     on 256
>     >             instead of
>     >                   >>  percentage and
>     >                   >>         >    this is
>     >                   >>         >    > what
>     >                   >>         >    > > happens when I used
>     >             "mri_average" without
>     >                   >>  specifying the
>     >                   >>         >    "-p". Is
>     >                   >>         >    > > there a way to
illustrate the
>     >             values in
>     >                   >>  percentage in a
>     >                   >>         > similar way
>     >                   >>         >    > > with mri_concat?
>     >                   >>         >    > >
>     >                   >>         >    > > Many thanks!
>     >                   >>         >    > >
>     >                   >>         >    > > Trisanna
>     >                   >>         >    > >
>     >                   >>         >    > >
>     >                   >>         >    > > --
>     >                   >>         >    > > Ph.D. Candidate
>     >                   >>         >    > > McGill University
>     >                   >>         >    > > Integrated Program in
>     Neuroscience
>     >                   >>         >    > > Psychology
>     >                   >>         >    > >
>     >                   >>         >    > >
>     >                   >>         >    > >
>     >                   >>         >    > >
>     >  _______________________________________________
>     >                   >>         >    > > Freesurfer mailing list
>     >                   >>         >    > >
> Freesurfer@nmr.mgh.harvard.edu
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>     >                   >>
>      <mailto:Freesurfer@nmr.mgh.harvard.edu
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
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>     >             <mailto:Freesurfer@nmr.mgh.harvard.edu
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
>     >                   >>         >
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
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>     >             <mailto:Freesurfer@nmr.mgh.harvard.edu
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>     >                   >>
>      <mailto:Freesurfer@nmr.mgh.harvard.edu
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
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>     >             <mailto:Freesurfer@nmr.mgh.harvard.edu
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>
>     >                   >>         >    >
>     >              <mailto:Freesurfer@nmr.mgh.harvard.edu
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
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>     >                   >>
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
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>     >             <mailto:Freesurfer@nmr.mgh.harvard.edu
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
>     >                   >>         >
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
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<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
>     >                   >>         >
>     >                   >>
>     >
>
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>     >                   >>
>     >
>
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>     >
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>
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<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>>>
>     >                   >>         >    >
>     >                   >>         >    >    --
>     >                   >>         >    > Douglas N. Greve, Ph.D.
>     >                   >>         >    > MGH-NMR Center
>     >                   >>         >    >
greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>     >                   >>  <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>
>     >                   >>  <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>     >                   >>  <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>>
>     >                   >>         >
>      <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu

...

>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>     >                   >>  <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>
>     >                   >>  <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>     >                   >>  <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>>>
>     >                   >>         >    > Phone
Number:617-724-2358 <tel:617-724-2358>
>     <tel:617-724-2358 <tel:617-724-2358>>
>     >             <tel:617-724-2358 <tel:617-724-2358>
<tel:617-724-2358 <tel:617-724-2358>>>
>     <tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358
<tel:617-724-2358>> <tel:617-724-2358 <tel:617-724-2358>
>     <tel:617-724-2358 <tel:617-724-2358>>>>
>     >             <tel:617-724-2358 <tel:617-724-2358>
<tel:617-724-2358 <tel:617-724-2358>>
>     <tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358
<tel:617-724-2358>>>
>     >                   >>  <tel:617-724-2358 <tel:617-724-2358>
>     <tel:617-724-2358 <tel:617-724-2358>> <tel:617-724-2358
<tel:617-724-2358> <tel:617-724-2358 <tel:617-724-2358>>>>>
>     >                   >>         > <tel:617-724-2358
<tel:617-724-2358> <tel:617-724-2358 <tel:617-724-2358>>
>     >             <tel:617-724-2358 <tel:617-724-2358>
<tel:617-724-2358 <tel:617-724-2358>>>
>     <tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358
<tel:617-724-2358>> <tel:617-724-2358 <tel:617-724-2358>
>     <tel:617-724-2358 <tel:617-724-2358>>>>
>     >             <tel:617-724-2358 <tel:617-724-2358>
<tel:617-724-2358>
>     <tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358>>
>     >                   >>  <tel:617-724-2358 <tel:617-724-2358>
>     <tel:617-724-2358 <tel:617-724-2358>> <tel:617-724-2358
<tel:617-724-2358>>>>>
>     >                   >>         > >  Fax: 617-726-7422
<tel:617-726-7422> <tel:617-726-7422>
>     >             <tel:617-726-7422 <tel:617-726-7422>
<tel:617-726-7422>>
>     <tel:617-726-7422 <tel:617-726-7422> <tel:617-726-7422>
<tel:617-726-7422
>     <tel:617-726-7422 <tel:617-726-7422>>>>
>     >             >>         <tel:617-726-7422
<tel:617-726-7422> <tel:617-726-7422>
>     <tel:617-726-7422 <tel:617-726-7422> <tel:617-726-7422>>
>     >             <tel:617-726-7422 <tel:617-726-7422>
<tel:617-726-7422>
>     <tel:617-726-7422 <tel:617-726-7422> <tel:617-726-7422>>>>
<tel:617-726-7422
>     >  <tel:617-726-7422 <tel:617-726-7422> <tel:617-726-7422>>
>     >             >>         <tel:617-726-7422
<tel:617-726-7422> <tel:617-726-7422>
>     <tel:617-726-7422 <tel:617-726-7422>>>
>     >             >>         >  <tel:617-726-7422

tel:617-726-7422

...

>     <tel:617-726-7422 <tel:617-726-7422>> <tel:617-726-7422>
>     >             <tel:617-726-7422 <tel:617-726-7422>
<tel:617-726-7422>
>     <tel:617-726-7422 <tel:617-726-7422>>>>>
>     >             >>         >  >
>     >             >>         >  >  Bugs:
>     >             >>
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     >
>      <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
>     >             >>
>     >
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     >
>      <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>>
>     >             >>         >
>     >
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     >
>      <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
>     >             >>
>     >
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     >
>      <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>>>
>     >             >>         >  >
>     >             >>
>     >
>      <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     >
>      <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
>     >             >>
>     >
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     >
>      <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>>
>     >             >>         >
>     >
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     >
>      <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
>     >             >>
>     >
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     >
>      <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>>>>
>     >             >>         >  >  FileDrop:
>     >             >> https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>     >             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>
>     >             >>
>      <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>     >             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>>
>     >             >>         >
>     >              <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>     >             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>
>     >             >>
>      <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>     >             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>>>
>     >             >>         >  >
>     >              <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>     >             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>
>     >             >>
>      <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>     >             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>>
>     >             >>         >
>     >              <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>     >             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>
>     >             >>
>      <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>     >             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>>>>
>     >             >>         >  >
>     > www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>     >
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>
>     >             >>
>     >
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>     >
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>>
>     >             >>         >
>     >             >>
>     >
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>     >
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>
>     >             >>
>     >
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>     >
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>>>
>     >             >>         >  >
>     >             >>
>     >
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>     >
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>
>     >             >>
>     >
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>     >
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>>
>     >             >>         >
>     >
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>     >
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>
>     >             >>
>     >
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>     >
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>>>>
>     >             >>         >  >  Outgoing:
>     >             >>         >  >
>     >             >>
>     >
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>     >
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>
>     >             >>
>     >
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>     >
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>>
>     >             >>         >
>     >             >>
>     >
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>     >
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>
>     >             >>
>     >
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>     >
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>>>
>     >             >>         >  >
>     >             >>
>     >
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>     >
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>
>     >             >>
>     >
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>     >
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>>
>     >             >>         >
>     >             >>
>     >
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>     >
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>
>     >             >>
>     >
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>     >
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

...

...

...

...

>

>     >             >>         >  >
>     >             >>         >  >
>     >  _______________________________________________
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
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>     >             >>
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>
>     >             >>       >
 <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
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>     >             <mailto:Freesurfer@nmr.mgh.harvard.edu
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
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>     >             >>
 <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     >             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
>     >             >>         >
<mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>     >             >>
 <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     >             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>>
>     >             >>         >  >
>     >             >>
>     >
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<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
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<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>     >             >>
>     >
>
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<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
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<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
>     >             >>         >
>     >             >>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>     >             >>
>     >
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>>
>     >             >>         >  >
>     >             >>         >
>     >             >>
>     >
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>     >             >>
>     >
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
>     >             >>         >
>     >             >>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>     >             >>
>     >
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>>>
>     >             >>         >  >
>     >             >>         >  >
>     >             >>         >  >  The information in this e-mail

is

...

>     >             intended only
>     >             >>         for the
>     >             >>         >  person to
>     >             >>         >  >  whom it is
>     >             >>         >  > addressed. If you believe this
e-mail
>     >             was sent to
>     >             >>         you in
>     >             >>         >  error and
>     >             >>         >  >  the e-mail
>     >             >>         >  >  contains patient information,
>     >             please contact the
>     >             >>         Partners
>     >             >>         >  > Compliance HelpLine at
>     >             >>         >  >
> http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>     <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>
>     >             <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>     <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>>
>     >             >>
 <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>     <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>
>     >             <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>     <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>>>
>     >             >>         >
>      <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>     <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>
>     >             <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>     <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>>
>     >             >>
 <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>     <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>
>     >             <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>     <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>>>>
>     >             >>         >  >
>     >              <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>     <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>
>     >             <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>     <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>>
>     >             >>
 <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>     <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>
>     >             <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>     <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>>>
>     >             >>         >
>      <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>     <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>
>     >             <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>     <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>>
>     >             >>
 <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>     <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>
>     >             <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>
>     <http://www.partners.org/complianceline
<http://www.partners.org/complianceline>>>>>> . If the e-mail
>     >             >>         was sent
>     >             >>         >  >     to you in error
>     >             >>         >  >  but does not contain patient
>     >             information, please
>     >             >>         contact the
>     >             >>         >  >  sender and properly
>     >             >>         >  >  dispose of the e-mail.
>     >             >>         >  >
>     >             >>         >  >
>     >             >>         >  >
>     >             >>         >  >
>     >             >>         >  >
>     >  _______________________________________________
>     >             >>         >  > Freesurfer mailing list
>     >             >>         >  > Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     >             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>     >             >>
 <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     >             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
>     >             >>         >
>      <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     >             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>     >             >>
 <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     >             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>
>     >             >>         >  >
>     >             >>
>     >
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>     >             >>
>     >
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
>     >             >>         >
>     >             >>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>     >             >>
>     >
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>>
>     >             >>         >
>     >             >>         >     --
>     >             >>         >  Douglas N. Greve, Ph.D.
>     >             >>         >  MGH-NMR Center
>     >             >>         > greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>     >             >>         <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>
>     >             >>         <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>     >             >>         <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>>
>     >             >>         >  Phone Number: 617-724-2358
<tel:617-724-2358>
>     <tel:617-724-2358 <tel:617-724-2358>>
>     >             <tel:617-724-2358 <tel:617-724-2358>
<tel:617-724-2358>>
>     <tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358>>
>     >             >>         <tel:617-724-2358
<tel:617-724-2358> <tel:617-724-2358>
>     <tel:617-724-2358 <tel:617-724-2358>>
>     >             <tel:617-724-2358 <tel:617-724-2358>
<tel:617-724-2358>
>     <tel:617-724-2358 <tel:617-724-2358>>>>
>     >             >>         >  Fax: 617-726-7422

tel:617-726-7422

...

>     <tel:617-726-7422 <tel:617-726-7422>> <tel:617-726-7422>
>     >             <tel:617-726-7422 <tel:617-726-7422>
<tel:617-726-7422>
>     <tel:617-726-7422 <tel:617-726-7422>>> <tel:617-726-7422
>     >             <tel:617-726-7422 <tel:617-726-7422>
<tel:617-726-7422>>
>     >             >>         <tel:617-726-7422
<tel:617-726-7422> <tel:617-726-7422>
>     <tel:617-726-7422 <tel:617-726-7422>>>>
>     >             >>         >
>     >             >>         >  Bugs:
>     > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     >
>      <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
>     >             >>
>     >
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     >
>      <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>>
>     >             >>         >
>     >
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     >
>      <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
>     >             >>
>     >
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     >
>      <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>>>
>     >             >>         >  FileDrop:
>     > https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>     >             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>
>     >             >>
>      <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>     >             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>>
>     >             >>         >
>     >              <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>     >             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>
>     >             >>
>      <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>     >             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>>>
>     >             >>         >
>     > www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>     >
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>
>     >             >>
>     >
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>     >
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>>
>     >             >>         >
>     >             >>
>     >
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>     >
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>
>     >             >>
>     >
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>     >
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>>>
>     >             >>         >  Outgoing:
>     >             >>         >
>     >             >>
>     >
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>     >
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>
>     >             >>
>     >
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>     >
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>>
>     >             >>         >
>     >             >>
>     >
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>     >
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>
>     >             >>
>     >
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>     >
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>>>
>     >             >>         >
>     >             >>         >
>     _______________________________________________
>     >             >>         >  Freesurfer mailing list
>     >             >>         > Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     >             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>     >             >>
 <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     >             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
>     >             >>
 <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     >             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>     >             >>
 <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     >             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>
>     >             >>         >
>     >             >>
>     >
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>     >             >>
>     >
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
>     >             >>         >
>     >             >>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>     >             >>
>     >
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>>
>     >             >>         >
>     >             >>         >
>     >             >>         >
>     >             >>         >
>     >             >>         >
>     _______________________________________________
>     >             >>         > Freesurfer mailing list
>     >             >>         > Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     >             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>     >             >>
 <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     >             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
>     >             >>         >
>     >             >>
>     >
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>     >             >>
>     >
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
>     >             >>
>     >             >>         --
>     >             >>         Douglas N. Greve, Ph.D.
>     >             >>         MGH-NMR Center
>     >             >> greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >             <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>
>     >             >>         Phone Number: 617-724-2358
<tel:617-724-2358>
>     <tel:617-724-2358 <tel:617-724-2358>> <tel:617-724-2358>
>     >             <tel:617-724-2358 <tel:617-724-2358>
<tel:617-724-2358> <tel:617-724-2358>>
>     >             >>         Fax: 617-726-7422
<tel:617-726-7422> <tel:617-726-7422>
>     <tel:617-726-7422 <tel:617-726-7422>>
>     >             <tel:617-726-7422 <tel:617-726-7422>
<tel:617-726-7422> <tel:617-726-7422>>
>     >             >>
>     >        >>         Bugs:
>     > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     >
>      <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
>     >             >>
>     >
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     >
>      <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>>
>     >             >>         FileDrop:
>     > https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>     >             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>
>     >             >>
>      <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>     >             <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>>
>     >             >>
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>     >
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>
>     >             >>
>     >
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>     >
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>>
>     >             >>         Outgoing:
>     >             >>
>     >
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>     >
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>
>     >             >>
>     >
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>     >
>
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>>
>     >             >>
>     >             >> ______________________________

---

...

>     >             >>         Freesurfer mailing list
>     >             >> Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     >             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>     >             >>
 <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     >             <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
>     >             >>
>     >
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
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>     >        Bugs:
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>     >
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>
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>     --
>     Douglas N. Greve, Ph.D.
>     MGH-NMR Center
> greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu

...

>     Phone Number: 617-724-2358 <tel:617-724-2358>

tel:617-724-2358

...

>     Fax: 617-726-7422 <tel:617-726-7422> <tel:617-726-7422>
>
>     Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
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<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
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<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
Phone Number: 617-724-2358 <tel:617-724-2358>
Fax: 617-726-7422 <tel:617-726-7422>

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
Outgoing:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

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Not really. It could be that minc has a scale factor in the file that we do not read. Can you check that?

On 11/09/2016 06:50 PM, Trisanna Sprung-Much wrote:

any thoughts as to what that could be?

Trisanna

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

On Mon, Nov 7, 2016 at 6:13 PM, Trisanna Sprung-Much <trisanna.sprung-much@mail.mcgill.ca mailto:trisanna.sprung-much@mail.mcgill.ca> wrote:

Hi Doug

Well, now that is very odd...
yes, when I use my minc viewer (see previous email image attached)
I see 0 and 1...

So, something is happening in the conversion of the .mnc


best
Trisanna

--
Ph.D. Candidate
McGill University
Integrated Program in Neuroscience
Psychology


On Mon, Nov 7, 2016 at 4:38 PM, Douglas N Greve
<greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:

    I did not see binary values. The values were 255 in the mnc
    volume. The
    caveat here is that I can only read it in using FS, so if there is
    something burried in the FS code that causes the values to
    change from 1
    to 255, I might not see it. Is there a minc viewer you can use to
    resolve this?


    On 11/07/2016 04:23 PM, Trisanna Sprung-Much wrote:
    > Hi Doug
    >
    > I am confused. The values of the input .mnc for mri_vol2surf
    are 0 and
    > 1.*I attach a snapshot using an inhouse software where you
    can see the
    > "1" highlighted in blue.* We also used the following command
    to ensure
    > they are 0 and 1:
    >
    > minclookup ' label_folder '/labels_final_minc1.mnc '
    label_folder
    > '/label_aalf.mnc -discrete -lut_string "4 1" -clobber --> this
    > extracts my id 4 that I painted this sulcus with and gives
    it a value
    > of 1.
    >
    > Do you mean you do not see the binary values on your end?
    >
    > Trisanna
    >
    > --
    > Ph.D. Candidate
    > McGill University
    > Integrated Program in Neuroscience
    > Psychology
    >
    >
    > On Mon, Nov 7, 2016 at 3:53 PM, Douglas N Greve
    > <greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>> wrote:
    >
    >     It looks like the input has values of 255 and 0, not 1
    and 0. How
    >     do you
    >     verify that the values are 0 and 1?
    >
    >
    >     On 11/07/2016 03:43 PM, Trisanna Sprung-Much wrote:
    >     > Hi Doug
    >     >
    >     > I have uploaded the label_aalf.mnc and
    testsurfaceoverlay.mgz
    >     >
    >     > Here is an example of the mri_vol2surf that I use
    >     >
    >     > *
    >     > trisanna@kaplan:~$ mri_vol2surf --mov
    >     >
    /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc --o
    >     >
    /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mgz
    >     --hemi lh
    >     > *--surf pial --regheader icbm-113
    >     > srcvol =
    /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc
    >     > srcreg unspecified
    >     > srcregold = 0
    >     > srcwarp unspecified
    >     > surf = pial
    >     > hemi = lh
    >     > reshape = 0
    >     > interp = nearest
    >     > float2int = round
    >     > GetProjMax = 0
    >     > INFO: float2int code = 0
    >     > INFO: changing type to float
    >     > Done loading volume
    >     > Computing registration from header.
    >     >   Using
    /data-01/trisanna/freesurfer/icbm-113/mri/orig.mgz as target
    >     > reference.
    >     > Reading surface
    /data-01/trisanna/freesurfer/icbm-113/surf/lh.pial
    >     > Done reading source surface
    >     > Mapping Source Volume onto Source Subject Surface
    >     >  1 0 0 0
    >     > using old
    >     > Done mapping volume to surface
    >     > Number of source voxels hit = 53960
    >     > Writing to
    >   
     /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mg
    <http://testsurfaceoverlay.mg>z
    >     > Dim: 159741 1 1
    >     > *
    >     > When I open this in Freeview, the values are either 0
    or 255. However,
    >     > they were binary (0 or 1) in the label_aalf.mnc input
    file.*
    >     >
    >     >
    >     > The mri_concat command that I ran on label_aalf for 20
    >     hemispheres is:
    >     >
    >     > *trisanna@kaplan:~$ mri_concat
    >     >
    >   
     /data-01/trisanna/freesurfer/fsaverage/committee_meeting/DISPLAY_overlays_fsaverage_left/aalf_lh/*.mgz
    >     > --o
    >     >
    >   
     /data-01/trisanna/freesurfer/fsaverage/committee_meeting/DISPLAY_overlays_fsaverage_left/aalf_lh/mri_concat_test.mgz
    >     > --mean*
    >     > ninputs = 20
    >     > Checking inputs
    >     > nframestot = 20
    >     > Allocing output
    >     > Done allocing
    >     > nframes = 20
    >     > Computing mean across frames
    >     > Writing to
    >     >
    >   
     /data-01/trisanna/freesurfer/fsaverage/committee_meeting/DISPLAY_overlays_fsaverage_left/aalf_lh/mri_concat_test.mgz
    >     >
    >     >
    >     > thanks
    >     >
    >     > Trisanna
    >     >
    >     > --
    >     > Ph.D. Candidate
    >     > McGill University
    >     > Integrated Program in Neuroscience
    >     > Psychology
    >     >
    >     >
    >     > On Tue, Nov 1, 2016 at 2:45 PM, Douglas N Greve
    >     > <greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
    >     >
    >     >     Can you send me the mri_concat command and also
    upload the
    >     input files
    >     >     to our filedrop?
    >     >
    >     > https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>
    >     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>>
    >     >
    >     >     On 11/01/2016 02:31 PM, Trisanna Sprung-Much wrote:
    >     >     > Does anyone know who wrote the script for
    mri_concat? I
    >     would really
    >     >     > like to get this figured out.
    >     >     >
    >     >     > thanks
    >     >     >
    >     >     > Trisanna
    >     >     >
    >     >     > --
    >     >     > Ph.D. Candidate
    >     >     > McGill University
    >     >     > Integrated Program in Neuroscience
    >     >     > Psychology
    >     >     >
    >     >     >
    >     >     > On Fri, Oct 21, 2016 at 12:13 PM, Trisanna
    Sprung-Much
    >     >     > <trisanna.sprung-much@mail.mcgill.ca
    <mailto:trisanna.sprung-much@mail.mcgill.ca>
    >     <mailto:trisanna.sprung-much@mail.mcgill.ca
    <mailto:trisanna.sprung-much@mail.mcgill.ca>>
    >     >     <mailto:trisanna.sprung-much@mail.mcgill.ca
    <mailto:trisanna.sprung-much@mail.mcgill.ca>
    >     <mailto:trisanna.sprung-much@mail.mcgill.ca
    <mailto:trisanna.sprung-much@mail.mcgill.ca>>>
    >     >     > <mailto:trisanna.sprung-much@mail.mcgill.ca
    <mailto:trisanna.sprung-much@mail.mcgill.ca>
    >     <mailto:trisanna.sprung-much@mail.mcgill.ca
    <mailto:trisanna.sprung-much@mail.mcgill.ca>>
    >     >     <mailto:trisanna.sprung-much@mail.mcgill.ca
    <mailto:trisanna.sprung-much@mail.mcgill.ca>
    >     <mailto:trisanna.sprung-much@mail.mcgill.ca
    <mailto:trisanna.sprung-much@mail.mcgill.ca>>>>> wrote:
    >     >     >
    >     >     >     thanks Bruce - I had indeed used this months
    ago but
    >     at the
    >     >     >     workshop this semester Doug had suggested
    mri_concat
    >     as it is a
    >     >     >     newer command and also doesn't blur the
    data. I am
    >     just having
    >     >     >     problems creating percentage values with
    mri_concat.
    >     >     >
    >     >     >     *Would you know why mri_vol2surf is taking a
    binary minc
    >     >     file and
    >     >     >     creating values ranging from 0-255 that
    mri_concat then
    >     >     preserves?*
    >     >     >
    >     >     >     best
    >     >     >     Trisanna
    >     >     >
    >     >     >     --
    >     >     >     Ph.D. Candidate
    >     >     >     McGill University
    >     >     >     Integrated Program in Neuroscience
    >     >     >     Psychology
    >     >     >
    >     >     >
    >     >     >     On Fri, Oct 21, 2016 at 9:29 AM, Bruce Fischl
    >     >     >     <fischl@nmr.mgh.harvard.edu
    <mailto:fischl@nmr.mgh.harvard.edu>
    >     <mailto:fischl@nmr.mgh.harvard.edu
    <mailto:fischl@nmr.mgh.harvard.edu>>
    >     >     <mailto:fischl@nmr.mgh.harvard.edu
    <mailto:fischl@nmr.mgh.harvard.edu>
    >     <mailto:fischl@nmr.mgh.harvard.edu
    <mailto:fischl@nmr.mgh.harvard.edu>>>
    >     >     <mailto:fischl@nmr.mgh.harvard.edu
    <mailto:fischl@nmr.mgh.harvard.edu>
    >     <mailto:fischl@nmr.mgh.harvard.edu
    <mailto:fischl@nmr.mgh.harvard.edu>>
    >     >     <mailto:fischl@nmr.mgh.harvard.edu
    <mailto:fischl@nmr.mgh.harvard.edu>
    <mailto:fischl@nmr.mgh.harvard.edu
    <mailto:fischl@nmr.mgh.harvard.edu>>>>>
    >     >     >     wrote:
    >     >     >
    >     >     >         Hi Trisanna
    >     >     >
    >     >     >         not sure about mri_concat, but mri_average
    >     -noconform -p ...
    >     >     >         should do the trick
    >     >     >
    >     >     >         cheers
    >     >     >         Bruce
    >     >     >         On Wed, 19 Oct 2016, Trisanna
    Sprung-Much wrote:
    >     >     >
    >     >     >             Something weird is happening with
    mri_vol2surf
    >     - even
    >     >     >             though the data looks great, the
    values are odd
    >     >     >             which carries over when I try to
    average with
    >     >     mri_concat.
    >     >     >             I would just like to get percentage
    values
    >     >     >             with mri_concat.
    >     >     >             thanks!
    >     >     >
    >     >     >             Trisanna
    >     >     >
    >     >     >             --
    >     >     >             Ph.D. CandidateMcGill University
    >     >     >
    >     >     >             Integrated Program in Neuroscience
    >     >     >             Psychology
    >     >     >
    >     >     >
    >     >     >             On Mon, Oct 17, 2016 at 5:21 PM,
    Trisanna
    >     Sprung-Much
    >     >     >             <trisanna.sprung-much@mail.mcgill.ca
    <mailto:trisanna.sprung-much@mail.mcgill.ca>
    >     <mailto:trisanna.sprung-much@mail.mcgill.ca
    <mailto:trisanna.sprung-much@mail.mcgill.ca>>
    >     >     <mailto:trisanna.sprung-much@mail.mcgill.ca
    <mailto:trisanna.sprung-much@mail.mcgill.ca>
    >     <mailto:trisanna.sprung-much@mail.mcgill.ca
    <mailto:trisanna.sprung-much@mail.mcgill.ca>>>
    >     >     >  <mailto:trisanna.sprung-much@mail.mcgill.ca
    <mailto:trisanna.sprung-much@mail.mcgill.ca>
    >     <mailto:trisanna.sprung-much@mail.mcgill.ca
    <mailto:trisanna.sprung-much@mail.mcgill.ca>>
    >     >     <mailto:trisanna.sprung-much@mail.mcgill.ca
    <mailto:trisanna.sprung-much@mail.mcgill.ca>
    >     <mailto:trisanna.sprung-much@mail.mcgill.ca
    <mailto:trisanna.sprung-much@mail.mcgill.ca>>>>> wrote:
    >     >     >                   Hi Doug
    >     >     >
    >     >     >             Here is what I ran:
    >     >     >
    >     >     >             trisanna@kaplan:~$ mri_vol2surf --mov
    >     >     >
    >     >     
    /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc
    >     >     >             --o
    >     >     >
    >     >     
    /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mg
    <http://testsurfaceoverlay.mg>
    >     <http://testsurfaceoverlay.mg>
    >     >     <http://testsurfaceoverlay.mg>z
    >     >     >        --hemi lh --surf pial --regheader
    >     >     >             icbm-113
    >     >     >             srcvol =
    >     >     >
    >     >     
    /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc
    >     >     >             srcreg unspecified
    >     >     >             srcregold = 0
    >     >     >             srcwarp unspecified
    >     >     >             surf = pial
    >     >     >             hemi = lh
    >     >     >             reshape = 0
    >     >     >             interp = nearest
    >     >     >             float2int = round
    >     >     >             GetProjMax = 0
    >     >     >             INFO: float2int code = 0
    >     >     >             INFO: changing type to float
    >     >     >             Done loading volume
    >     >     >             Computing registration from header.
    >     >     >               Using
    >     >     /data-01/trisanna/freesurfer/icbm-113/mri/orig.mgz
    >     >     >             as target reference.
    >     >     >             Reading surface
    >     >     >  /data-01/trisanna/freesurfer/icbm-113/surf/lh.pial
    >     >     >             Done reading source surface
    >     >     >             Mapping Source Volume onto Source
    Subject Surface
    >     >     >              1 0 0 0
    >     >     >             using old
    >     >     >             Done mapping volume to surface
    >     >     >             Number of source voxels hit = 53960
    >     >     >             Writing to
    >     >     >
    >     >     
    /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mg
    <http://testsurfaceoverlay.mg>
    >     <http://testsurfaceoverlay.mg>
    >     >     <http://testsurfaceoverlay.mg>z
    >     >     >             Dim: 159741 1 1
    >     >     >
    >     >     >             When I open this in Freeview, the
    values are
    >     either 0 or
    >     >     >             255 (see attached image). However, they
    >     >     >             were binary (0 or 1) in the
    label_aalf.mnc
    >     input file...
    >     >     >
    >     >     >             Trisanna
    >     >     >
    >     >     >
    >     >     >             --
    >     >     >             Ph.D. CandidateMcGill University
    >     >     >
    >     >     >             Integrated Program in Neuroscience
    >     >     >             Psychology
    >     >     >
    >     >     >
    >     >     >             On Wed, Oct 12, 2016 at 2:09 PM,
    Douglas N Greve
    >     >     >             <greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >        <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>> wrote:
    >     >     >                   Hmmm, I don't know what could
    be going
    >     on. Can you
    >     >     >             send the command line
    >     >     >                   and all terminal output?
    >     >     >
    >     >     >
    >     >     >                   On 10/06/2016 10:37 PM,
    Trisanna Sprung-Much
    >     >     wrote:
    >     >     >                   > Hi Doug
    >     >     >                   >
    >     >     >                   > So the pixel values are 0
    and 1 *in
    >     the original
    >     >     >             .mnc*. It seems that
    >     >     >                   > after performing
    mri_vol2surf they
    >     become 0 and
    >     >     >             255, and stay this way
    >     >     >                   > after mri_surf2surf as well.
    So, why would
    >     >     >             mri_vol2surf be changing
    >     >     >                   > the values?
    >     >     >                   >
    >     >     >                   > Trisanna
    >     >     >                   >
    >     >     >                   >
    >     >     >                   >
    >     >     >                   > --
    >     >     >                   > Ph.D. Candidate
    >     >     >                   > McGill University
    >     >     >                   > Integrated Program in
    Neuroscience
    >     >     >                   > Psychology
    >     >     >                   >
    >     >     >                   >
    >     >     >                   > On Thu, Oct 6, 2016 at 11:30 AM,
    >     Douglas Greve
    >     >     >                   > <greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>>> wrote:
    >     >     >                   >
    >     >     >                   >     What are the pixel
    values in the mgz file?
    >     >     >             They should be binary,
    >     >     >                   >     ie, 1=in a label, 0 =
    out of label
    >     >     >                   >
    >     >     >                   >
    >     >     >                   >     On 10/6/16 10:22 AM,
    Trisanna
    >     >     Sprung-Much wrote:
    >     >     >                   >>  Overlays in .mgz format using
    >     mri_vol2surf
    >     >     >                   >>
    >     >     >                   >>  --
    >     >     >                   >>  Ph.D. Candidate
    >     >     >                   >>  McGill University
    >     >     >                   >>  Integrated Program in
    Neuroscience
    >     >     >                   >>  Psychology
    >     >     >                   >>
    >     >     >                   >>
    >     >     >                   >>  On Wed, Oct 5, 2016 at
    5:56 PM,
    >     Douglas
    >     >     N Greve
    >     >     >                   >>  <greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>
    >     >     > <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>>> wrote:
    >     >     >                   >>
    >     >     >                   >>    what is a labeled vertex?
    >     What file
    >     >     >             format? mgz? annot?
    >     >     >                   >>
    >     >     >                   >>
    >     >     >                   >>    On 10/05/2016 05:03 PM,
    Trisanna
    >     >     >             Sprung-Much wrote:
    >     >     >                   >>    > the source files are
    labelled
    >     >     vertices
    >     >     >             from 20 subjects:
    >     >     >                   >>    >
    >     >     >                   >>    > -T1s were labelled
    using an MNI
    >     >     software
    >     >     >                   >>    > -Surfaces were created in
    >     FreeSurfer
    >     >     >             and surface overlays
    >     >     >                   >>    of the
    >     >     >                   >>    > labels were created using
    >     >     mri_vol2surf
    >     >     >                   >>    > -Surface overlays were
    >     registered to
    >     >     >             fsaverage using
    >     >     >                   >> mri_surf2surf and
    >     >     >                   >>    > then averaged to create a
    >     probability
    >     >     >             map, originally using
    >     >     >                   >> "mri_average"
    >     >     >                   >>    >
    >     >     >                   >>    > So, essentially the
    >     overlays are
    >     >     binary
    >     >     >             files of my labels
    >     >     >                   >>    I believe
    >     >     >                   >>    > - I can send one over if
    >     you wish.
    >     >     >                   >>    >
    >     >     >                   >>    > Trisanna
    >     >     >                   >>    >
    >     >     >                   >>    >
    >     >     >                   >>    > --
    >     >     >                   >>    > Ph.D. Candidate
    >     >     >                   >>    > McGill University
    >     >     >                   >>    > Integrated Program in
    >     Neuroscience
    >     >     >                   >>    > Psychology
    >     >     >                   >>    >
    >     >     >                   >>    >
    >     >     >                   >>    > On Wed, Oct 5, 2016 at
    4:52 PM,
    >     >     Douglas
    >     >     >             N Greve
    >     >     >                   >>    >
    <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>>
    >     >     > >>         <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>
    >     >     >                   >>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>>>> wrote:
    >     >     >                   >>    >
    >     >     >                   >>    >    what are the source
    >     files ("all
    >     >     >             files"). What data
    >     >     >                   >>    type, value range,
    >     >     >                   >>    >    where did they come
    from?
    >     >     >                   >>    >
    >     >     >                   >>    >
    >     >     >                   >>    >    On 10/05/2016 04:48 PM,
    >     Trisanna
    >     >     >             Sprung-Much wrote:
    >     >     >                   >>    >    > Hi Doug
    >     >     >                   >>    >    >
    >     >     >                   >>    >    > So, of course now
    it works
    >     >     >             without --keep-filetype...
    >     >     >                   >>    :p it looks
    >     >     >                   >>    >    > pretty much the same
    >     was when I
    >     >     >             use --keep-filetype.
    >     >     >                   >>    >    >
    >     >     >                   >>    >    > However, the
    values of
    >     Min and
    >     >     >             Max are still odd (out
    >     >     >                   >>    of 256) - see
    >     >     >                   >>    >    > snapshot
    >     >     >                   >>    >    >
    >     >     >                   >>    >    > Trisanna
    >     >     >                   >>    >    >
    >     >     >                   >>    >    >
    >     >     >                   >>    >    >
    >     >     >                   >>    >    >
    >     >     >                   >>    >    >
    >     >     >                   >>    >    > --
    >     >     >                   >>    >    > Ph.D. Candidate
    >     >     >                   >>    >    > McGill University
    >     >     >                   >>    >    > Integrated Program in
    >     >     Neuroscience
    >     >     >                   >>    >    > Psychology
    >     >     >                   >>    >    >
    >     >     >                   >>    >    >
    >     >     >                   >>    >    > On Wed, Oct 5,
    2016 at
    >     4:23 PM,
    >     >     >             Douglas N Greve
    >     >     >                   >>    >    >
    >     <greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>
    >     >     >                   >>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>>
    >     >     >                   >>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>
    >     >     >                   >>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>>>
    >     >     >                   >>    >
    >     >      <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>
    >     >     >                   >>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>>
    >     >     >                   >>    >
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>
    >     >     >                   >>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>>>>> wrote:
    >     >     >                   >>    >    >
    >     >     >                   >>    >    > Depending upon the
    >     type of the
    >     >     >             data, the
    >     >     >                   >> --keep-datatype may
    >     >     >                   >>    >    mess
    >     >     >                   >>    >    > things
    >     >     >                   >>    >    >    up quite a bit.
    >     What happens
    >     >     >             if you don't include
    >     >     >                   >>    that? It
    >     >     >                   >>    >    will not
    >     >     >                   >>    >    > create an annotation.
    >     maybe you
    >     >     >             mean some other
    >     >     >                   >>    file type?
    >     >     >                   >>    >    >
    >     >     >                   >>    >    >
    >     >     >                   >>    >    >    On 10/05/2016
    02:36 PM,
    >     >     >             Trisanna Sprung-Much wrote:
    >     >     >                   >>    >    > >
    >     >     >                   >>    >    > > Hi Doug
    >     >     >                   >>    >    > >
    >     >     >                   >>    >    > > I spoke with
    you at the
    >     >     >             Freesurfer tutorial
    >     >     >                   >>    last week
    >     >     >                   >>    >    about using
    >     >     >                   >>    >    > > mri_average to
    >     average my
    >     >     >             sulcal labels and get a
    >     >     >                   >>    > probability map on
    >     >     >                   >>    >    > > fsaverage. You had
    >     suggested
    >     >     >             using "mri_concat"
    >     >     >                   >> instead,
    >     >     >                   >>    >    which is a
    >     >     >                   >>    >    > > newer command.
    So, I
    >     >     performed
    >     >     >             the following
    >     >     >                   >> command:
    >     >     >                   >>    >    > >
    >     >     >                   >>    >    > > *mri_concat all
    >     files --o
    >     >     >             output.mgz --mean
    >     >     >                   >> --keep-datatype*
    >     >     >                   >>    >    > >
    >     >     >                   >>    >    > > I had to put
    >     --keep-datatype
    >     >     >             or else it tried
    >     >     >                   >>    to create an
    >     >     >                   >>    >    annot
    >     >     >                   >>    >    > file.
    >     >     >                   >>    >    > >
    >     >     >                   >>    >    > > This worked
    just fine.
    >     >     >                   >>    >    > >
    >     >     >                   >>    >    > > My question then is
    >     >     concerning
    >     >     >             *the min and max
    >     >     >                   >> values
    >     >     >                   >>    >    *when this
    >     >     >                   >>    >    > > average is
    overlayed in
    >     >     >             Freeview. See the snapshot
    >     >     >                   >>    > attached. The
    >     >     >                   >>    >    > > values seem to
    be based
    >     >     on 256
    >     >     >             instead of
    >     >     >                   >> percentage and
    >     >     >                   >>    >    this is
    >     >     >                   >>    >    > what
    >     >     >                   >>    >    > > happens when I used
    >     >     >             "mri_average" without
    >     >     >                   >> specifying the
    >     >     >                   >>    >    "-p". Is
    >     >     >                   >>    >    > > there a way to
    >     illustrate the
    >     >     >             values in
    >     >     >                   >> percentage in a
    >     >     >                   >>    > similar way
    >     >     >                   >>    >    > > with mri_concat?
    >     >     >                   >>    >    > >
    >     >     >                   >>    >    > > Many thanks!
    >     >     >                   >>    >    > >
    >     >     >                   >>    >    > > Trisanna
    >     >     >                   >>    >    > >
    >     >     >                   >>    >    > >
    >     >     >                   >>    >    > > --
    >     >     >                   >>    >    > > Ph.D. Candidate
    >     >     >                   >>    >    > > McGill University
    >     >     >                   >>    >    > > Integrated
    Program in
    >     >     Neuroscience
    >     >     >                   >>    >    > > Psychology
    >     >     >                   >>    >    > >
    >     >     >                   >>    >    > >
    >     >     >                   >>    >    > >
    >     >     >                   >>    >    > >
    >     >     >  _______________________________________________
    >     >     >                   >>    >    > > Freesurfer
    mailing list
    >     >     >                   >>    >    > >
    >     > Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >     >           
     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
    >     >     >                   >>
    >     >      <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >     >           
     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>
    >     >     >                   >>    >
    >     >     >             
    <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >     >           
     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
    >     >     >                   >>
    >     >      <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >     >           
     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>>
    >     >     >                   >>    >    >
    >     >     >             
    <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
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    >     >     >                   >>    >    >
    >     >     >                   >>    >    >    --
    >     >     >                   >>    >    > Douglas N. Greve,
    Ph.D.
    >     >     >                   >>    >    > MGH-NMR Center
    >     >     >                   >>    >    >
    > greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
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    >     <mailto:greve@nmr.mgh.harvard.edu
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    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
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    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>>
    >     >     >                   >>
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    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>
    >     >     >                   >>
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    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
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    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>>>>
    >     >     >                   >>    >    > Phone
    >     Number:617-724-2358 <tel:617-724-2358> <tel:617-724-2358
    <tel:617-724-2358>>
    >     >     <tel:617-724-2358 <tel:617-724-2358>
    <tel:617-724-2358 <tel:617-724-2358>>>
    >     >     >             <tel:617-724-2358 <tel:617-724-2358>
    <tel:617-724-2358 <tel:617-724-2358>>
    >     <tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358
    <tel:617-724-2358>>>>
    >     >     <tel:617-724-2358 <tel:617-724-2358>
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    <tel:617-724-2358>
    >     <tel:617-724-2358 <tel:617-724-2358>>> <tel:617-724-2358
    <tel:617-724-2358> <tel:617-724-2358 <tel:617-724-2358>>
    >     >     <tel:617-724-2358 <tel:617-724-2358>
    <tel:617-724-2358 <tel:617-724-2358>>>>>
    >     >     >             <tel:617-724-2358 <tel:617-724-2358>
    <tel:617-724-2358 <tel:617-724-2358>>
    >     <tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358
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    >     >     <tel:617-724-2358 <tel:617-724-2358>
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    >     >     >                   >> <tel:617-724-2358
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    >     >     <tel:617-724-2358 <tel:617-724-2358>
    <tel:617-724-2358>> <tel:617-724-2358
    >     <tel:617-724-2358 <tel:617-724-2358>> <tel:617-724-2358
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    >     >     >                   >>    > <tel:617-724-2358
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    >     <tel:617-724-2358 <tel:617-724-2358>> <tel:617-724-2358
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    >     >     >             <tel:617-724-2358 <tel:617-724-2358>
    <tel:617-724-2358>
    >     <tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358>>>
    >     >     <tel:617-724-2358 <tel:617-724-2358>
    <tel:617-724-2358> <tel:617-724-2358
    >     <tel:617-724-2358 <tel:617-724-2358>>> <tel:617-724-2358
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    >     >     <tel:617-724-2358 <tel:617-724-2358>
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    >     >     >             <tel:617-724-2358 <tel:617-724-2358>
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    >     <tel:617-724-2358 <tel:617-724-2358>>
    >     >     <tel:617-724-2358 <tel:617-724-2358>
    <tel:617-724-2358> <tel:617-724-2358>>
    >     >     >                   >> <tel:617-724-2358
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    >     >     <tel:617-724-2358 <tel:617-724-2358>
    <tel:617-724-2358>> <tel:617-724-2358
    >     <tel:617-724-2358 <tel:617-724-2358>>>>>>
    >     >     >                   >>    > >  Fax: 617-726-7422
    <tel:617-726-7422>
    >     <tel:617-726-7422 <tel:617-726-7422>> <tel:617-726-7422>
    >     >     >             <tel:617-726-7422 <tel:617-726-7422>
    <tel:617-726-7422>
    >     <tel:617-726-7422 <tel:617-726-7422>>>
    >     >     <tel:617-726-7422 <tel:617-726-7422>
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    >     <tel:617-726-7422 <tel:617-726-7422>
    >     >     <tel:617-726-7422 <tel:617-726-7422>
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    >     >     >             >>  <tel:617-726-7422 <tel:617-726-7422>
    >     <tel:617-726-7422 <tel:617-726-7422>> <tel:617-726-7422>
    >     >     <tel:617-726-7422 <tel:617-726-7422>
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    >     >     >             <tel:617-726-7422 <tel:617-726-7422>
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    >     <tel:617-726-7422 <tel:617-726-7422>>
    >     >     <tel:617-726-7422 <tel:617-726-7422>
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    >     <tel:617-726-7422 <tel:617-726-7422>
    >     >     >  <tel:617-726-7422 <tel:617-726-7422>
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    >     >     >             >>  <tel:617-726-7422 <tel:617-726-7422>
    >     <tel:617-726-7422 <tel:617-726-7422>> <tel:617-726-7422>
    >     >     <tel:617-726-7422 <tel:617-726-7422>
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    >     >     >             >>  >  <tel:617-726-7422
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    >     >     <tel:617-726-7422 <tel:617-726-7422>
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    >     >     >             <tel:617-726-7422 <tel:617-726-7422>
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    >     <tel:617-726-7422 <tel:617-726-7422>>
    >     >     <tel:617-726-7422 <tel:617-726-7422>
    <tel:617-726-7422>>>>>
    >     >     >             >>  >  >
    >     >     >             >>  >  >  Bugs:
    >     >     >             >>
    > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
    >     >   
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    >     >     >
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    >     >     >             >>
    >     >     >
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    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
    >     >   
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    >     >     >
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    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
    >     >   
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    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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    >     >     >             >>  >
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    >     >   
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    >     >     >
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    >     >   
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    >     >     >             >>
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    >     >     >             >>  >  >
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    >     >     >             >>  >
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    >     >     >             >>
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    >     >     >
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    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>>>>>
    >     >     >             >>  >  >  FileDrop:
    >     >     >             >>
    https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>
    >     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
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    >     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
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    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
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    >     >     >             >>
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    >     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
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    >     >     >             >>  >
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    >     >     >             >>  >  >
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    >     >     >             >>  >  >
    >     >     >             >>  >  >
    >     >     >             >>  >  >  The information in this
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    >     >     >             intended only
    >     >     >             >>  for the
    >     >     >             >>  >  person to
    >     >     >             >>  >  >  whom it is
    >     >     >             >>  >  > addressed. If you believe this
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    >     >     >             was sent to
    >     >     >             >>  you in
    >     >     >             >>  >  error and
    >     >     >             >>  >  >  the e-mail
    >     >     >             >>  >  >  contains patient information,
    >     >     >             please contact the
    >     >     >             >>  Partners
    >     >     >             >>  >  > Compliance HelpLine at
    >     >     >             >>  >  >
    >     > http://www.partners.org/complianceline
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    >     <http://www.partners.org/complianceline
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    >     <http://www.partners.org/complianceline
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    >     >     >             >>  was sent
    >     >     >             >>  >  >     to you in error
    >     >     >             >>  >  >  but does not contain patient
    >     >     >             information, please
    >     >     >             >>  contact the
    >     >     >             >>  >  >  sender and properly
    >     >     >             >>  >  >  dispose of the e-mail.
    >     >     >             >>  >  >
    >     >     >             >>  >  >
    >     >     >             >>  >  >
    >     >     >             >>  >  >
    >     >     >             >>  >  >
    >     >     >  _______________________________________________
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    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >     >
    >     >
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>>
    >     >     >             >>  >
    >     >     >             >>
    >     >     >
    >     >
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >     >
    >     >
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
    >     >     >             >>
    >     >     >
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >     >
    >     >
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>>>
    >     >     >             >>  >
    >     >     >             >>  >     --
    >     >     >             >>  >  Douglas N. Greve, Ph.D.
    >     >     >             >>  >  MGH-NMR Center
    >     >     >             >>  > greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>
    >     >     >             >>
     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>>
    >     >     >             >>
     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>
    >     >     >             >>
     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>>>
    >     >     >             >>  >  Phone Number: 617-724-2358
    <tel:617-724-2358>
    >     <tel:617-724-2358 <tel:617-724-2358>>
    >     >     <tel:617-724-2358 <tel:617-724-2358>
    <tel:617-724-2358>>
    >     >     >             <tel:617-724-2358 <tel:617-724-2358>
    <tel:617-724-2358>
    >     <tel:617-724-2358 <tel:617-724-2358>>>
    >     >     <tel:617-724-2358 <tel:617-724-2358>
    <tel:617-724-2358> <tel:617-724-2358>>
    >     >     >             >>  <tel:617-724-2358 <tel:617-724-2358>
    >     <tel:617-724-2358 <tel:617-724-2358>> <tel:617-724-2358>
    >     >     <tel:617-724-2358 <tel:617-724-2358>
    <tel:617-724-2358>>
    >     >     >             <tel:617-724-2358 <tel:617-724-2358>
    <tel:617-724-2358>
    >     <tel:617-724-2358 <tel:617-724-2358>>
    >     >     <tel:617-724-2358 <tel:617-724-2358>
    <tel:617-724-2358>>>>
    >     >     >             >>  >  Fax: 617-726-7422
    <tel:617-726-7422> <tel:617-726-7422>
    >     >     <tel:617-726-7422 <tel:617-726-7422>
    <tel:617-726-7422>> <tel:617-726-7422>
    >     >     >             <tel:617-726-7422 <tel:617-726-7422>
    <tel:617-726-7422>
    >     <tel:617-726-7422 <tel:617-726-7422>>
    >     >     <tel:617-726-7422 <tel:617-726-7422>
    <tel:617-726-7422>>> <tel:617-726-7422
    >     >     >             <tel:617-726-7422 <tel:617-726-7422>
    <tel:617-726-7422>
    >     <tel:617-726-7422 <tel:617-726-7422>>>
    >     >     >             >>  <tel:617-726-7422 <tel:617-726-7422>
    >     <tel:617-726-7422 <tel:617-726-7422>> <tel:617-726-7422>
    >     >     <tel:617-726-7422 <tel:617-726-7422>
    <tel:617-726-7422>>>>
    >     >     >             >>  >
    >     >     >             >>  >  Bugs:
    >     >     > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
    >     >   
     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
    >     >     >
    >     >     
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
    >     >   
     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>>
    >     >     >             >>
    >     >     >
    >     >   
     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
    >     >   
     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
    >     >     >
    >     >     
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
    >     >   
     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>>>
    >     >     >             >>  >
    >     >     >
    >     >   
     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
    >     >   
     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
    >     >     >
    >     >     
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
    >     >   
     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>>
    >     >     >             >>
    >     >     >
    >     >   
     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
    >     >   
     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
    >     >     >
    >     >     
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
    >     >   
     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>>>>
    >     >     >             >>  >  FileDrop:
    >     >     > https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>
    >     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>>
    >     >     >           
     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>
    >     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>>>
    >     >     >             >>
    >     >      <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>
    >     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>>
    >     >     >           
     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>
    >     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>>>>
    >     >     >             >>  >
    >     >     >             
    <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>
    >     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>>
    >     >     >           
     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>
    >     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>>>
    >     >     >             >>
    >     >      <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>
    >     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>>
    >     >     >           
     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>
    >     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>>>>>
    >     >     >             >>  >
    >     >     >
    www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
    >     >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>
    >     >     >
    >     >
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
    >     >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>>
    >     >     >             >>
    >     >     >
    >     >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
    >     >   
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    >     >     >             >>  >  Outgoing:
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    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
    >     >     >             >>
    >      <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >     >           
     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>
    >     >     >             >>  >
    >     >     >             >>
    >     >     >
    > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >     >
    >     >
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
    >     >     >             >>
    >     >     >
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >     >
    >     >
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>>
    >     >     >             >>
    >     >     >             >>         --
    >     >     >             >>  Douglas N. Greve, Ph.D.
    >     >     >             >>  MGH-NMR Center
    >     >     >             >> greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     >             <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>>
    >     >     >             >>  Phone Number: 617-724-2358
    <tel:617-724-2358>
    >     <tel:617-724-2358 <tel:617-724-2358>>
    >     >     <tel:617-724-2358 <tel:617-724-2358>
    <tel:617-724-2358>> <tel:617-724-2358>
    >     >     >             <tel:617-724-2358 <tel:617-724-2358>
    <tel:617-724-2358>
    >     <tel:617-724-2358 <tel:617-724-2358>> <tel:617-724-2358>>
    >     >     >             >>  Fax: 617-726-7422 <tel:617-726-7422>
    >     <tel:617-726-7422 <tel:617-726-7422>> <tel:617-726-7422>
    >     >     <tel:617-726-7422 <tel:617-726-7422>
    <tel:617-726-7422>>
    >     >     >             <tel:617-726-7422 <tel:617-726-7422>
    <tel:617-726-7422>
    >     <tel:617-726-7422 <tel:617-726-7422>> <tel:617-726-7422>>
    >     >     >             >>
    >     >     >        >>         Bugs:
    >     >     > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
    >     >   
     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
    >     >     >
    >     >     
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
    >     >   
     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>>
    >     >     >             >>
    >     >     >
    >     >   
     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
    >     >   
     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
    >     >     >
    >     >     
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
    >     >   
     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>>>
    >     >     >             >>  FileDrop:
    >     >     > https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>
    >     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>>
    >     >     >           
     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>
    >     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>>>
    >     >     >             >>
    >     >      <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>
    >     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>>
    >     >     >           
     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>
    >     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>>>>
    >     >     >             >>
    >     > www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
    >     >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>
    >     >     >
    >     >
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
    >     >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>>
    >     >     >             >>
    >     >     >
    >     >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
    >     >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>
    >     >     >
    >     >
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
    >     >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>>>
    >     >     >             >>  Outgoing:
    >     >     >             >>
    >     >     >
    >
    ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
    >   
     <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
    >     >
    >     
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
    >   
     <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>
    >     >     >
    >     >
    >   
     <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
    >   
     <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
    >     >
    >     
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
    >   
     <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>>
    >     >     >             >>
    >     >     >
    >     >
    >     
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
    >   
     <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
    >     >
    >     
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
    >   
     <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>
    >     >     >
    >     >
    >   
     <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
    >   
     <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
    >     >
    >     
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
    >   
     <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>>>
    >     >     >             >>
    >     >     >             >>
    _______________________________________________
    >     >     >             >>  Freesurfer mailing list
    >     >     >             >> Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >     >           
     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
    >     >     >             >>
    >      <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >     >           
     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>
    >     >     >             >>
    >     >     >
    > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >     >
    >     >
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
    >     >     >             >>
    >     >     >
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >     >
    >     >
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>>
    >     >     >             >>
    >     >     >             >>
    >     >     >             >>
    >     >     >             >>
    >     >     >             >>
    _______________________________________________
    >     >     >             >>  Freesurfer mailing list
    >     >     >             >> Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >     >           
     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
    >     >     >             >>
     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >     >           
     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>
    >     >     >             >>
    >     >     >
    > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
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    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >     >
    >     >
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
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    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
    >     >     >             >>
    >     >     >
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
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    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >     >
    >     >
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>>
    >     >     >             >
    _______________________________________________
    >     >     >             Freesurfer mailing
    >     >     >             >     list
    Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >     >           
     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
    >     >     >             >
    <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >     >           
     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>
    >     >     >             >
    >     >     >
    > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
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    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
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    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >     >
    >     >
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
    >     >     >             >
    >     >     >
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >     >
    >     >
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>>
    >     >     >             The
    >     >     >             >  information in this e-mail is
    intended only
    >     >     for the
    >     >     >             person to whom
    >     >     >             >     it is addressed. If you
    believe this e-mail
    >     >     was sent
    >     >     >             to you in
    >     >     >             >     error and the e-mail contains
    patient
    >     information,
    >     >     >             please contact
    >     >     >             >     the Partners Compliance
    HelpLine at
    >     >     >             >
    http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>
    >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>>
    >     >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>
    >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>>>
    >     >     >           
     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>
    >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>>
    >     >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>
    >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>>>>
    >     >     >             >   
     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>
    >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>>
    >     >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>
    >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>>>
    >     >     >           
     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>
    >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>>
    >     >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>
    >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>>>>> . If the e-mail
    >     >     >             was sent
    >     >     >             >     to you in error but does not
    contain patient
    >     >     >             information, please
    >     >     >             >     contact the sender and
    properly dispose
    >     of the
    >     >     e-mail.
    >     >     >             >
    >     >     >             >
    _______________________________________________
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    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >     >           
     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
    >     >     >             >
    >     >   
     >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
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    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >     >
    >     >
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
    >     >     >             --
    >     >     >             Douglas N. Greve, Ph.D.
    >     >     >             MGH-NMR Center
    >     >     > greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>
    >     >     >             Phone Number: 617-724-2358
    <tel:617-724-2358> <tel:617-724-2358>
    >     <tel:617-724-2358 <tel:617-724-2358>>
    >     >     <tel:617-724-2358 <tel:617-724-2358>
    <tel:617-724-2358>>
    >     >     >             Fax:617-726-7422 <tel:617-726-7422>
    <tel:617-726-7422> <tel:617-726-7422> <tel:617-726-7422>
    >     >     >
    >     >     >        Bugs:
    > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
    >     >   
     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
    >     >     >
    >     >     
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
    >     >   
     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>>
    >     >     >             FileDrop:
    > https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>
    >     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>>
    >     >     >           
     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>
    >     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>>>
    >     >     >
    www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
    >     >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>
    >     >     >
    >     >
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
    >     >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>>
    >     >     >             Outgoing:
    >     >     >
    >
    ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
    >   
     <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
    >     >
    >     
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
    >   
     <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>
    >     >     >
    >     >
    >   
     <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
    >   
     <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
    >     >
    >     
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
    >   
     <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>>
    >     >     >  _______________________________________________
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    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
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    >     >     >           
     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
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    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
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    >     >     >
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    >     >
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    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
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    >     >     >         Freesurfer mailing list
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    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >     >         <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
    >     >     >
    > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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    >   
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    >     >     >
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    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
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    >   
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    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
    >     >     >
    >     >     >
    >     >     >    The information in this e-mail is intended
    only for the
    >     >     person
    >     >     >         to whom it is
    >     >     >         addressed. If you believe this e-mail
    was sent to
    >     you in
    >     >     error
    >     >     >         and the e-mail
    >     >     >         contains patient information, please
    contact the
    >     Partners
    >     >     >         Compliance HelpLine at
    >     >     > http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>
    >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>>
    >     >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>
    >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>>>
    >     >     >         <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>
    >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>>
    >     >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>
    >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>>>> . If the e-mail was
    >     >     >         sent to you in error
    >     >     >         but does not contain patient
    information, please
    >     contact the
    >     >     >         sender and properly
    >     >     >         dispose of the e-mail.
    >     >     >
    >     >     >
    >     >     >
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    >     >     >
    >     >     > _______________________________________________
    >     >     > Freesurfer mailing list
    >     >     > Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >     >
    > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >
    >     >     --
    >     >     Douglas N. Greve, Ph.D.
    >     >     MGH-NMR Center
    >     > greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>
    >     >     Phone Number: 617-724-2358 <tel:617-724-2358>
    <tel:617-724-2358> <tel:617-724-2358>
    >     >     Fax: 617-726-7422 <tel:617-726-7422>
    <tel:617-726-7422> <tel:617-726-7422>
    >     >
    >     >     Bugs:
    surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
    >     >   
     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
    >     >     FileDrop:
    https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>
    >     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>>
    >     >www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
    >     >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>
    >     >     Outgoing:
    >     >
    ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
    >   
     <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
    >     >
    >     
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
    >   
     <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>
    >     >
    >     >     _______________________________________________
    >     >     Freesurfer mailing list
    >     > Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >
    https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >
    >     
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >
    >     >
    >     >
    >     >
    >     > _______________________________________________
    >     > Freesurfer mailing list
    >     > Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >   
     >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >
    >     --
    >     Douglas N. Greve, Ph.D.
    >     MGH-NMR Center
    > greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    >     Phone Number: 617-724-2358 <tel:617-724-2358>
    <tel:617-724-2358>
    >     Fax: 617-726-7422 <tel:617-726-7422> <tel:617-726-7422>
    >
    >     Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
    >     FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    >     <https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>>
    > www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    >   
     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
    >     Outgoing:
    >
    ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
    >   
     <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
    >
    >     _______________________________________________
    >     Freesurfer mailing list
    > Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >
    >
    >
    >
    > _______________________________________________
    > Freesurfer mailing list
    > Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>

    --
    Douglas N. Greve, Ph.D.
    MGH-NMR Center
    greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
    Phone Number: 617-724-2358 <tel:617-724-2358>
    Fax: 617-726-7422 <tel:617-726-7422>

    Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
    <https://gate.nmr.mgh.harvard.edu/filedrop2>
    www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    Outgoing:
    ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
    <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>

    _______________________________________________
    Freesurfer mailing list
    Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>

---

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